RNA id: TU166266


Basic Information

Item Value
RNA id TU166266
length 2386
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G132596
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4109513 ~ 4111930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACATCTATTATATAGACATAGAAAAGTTGCAATGTTTTcttgtcaaattaaaaaaagattggcTTCCTTTTTTCTTCACATAGTCAATGCTGCTTGCcactcacaaacaaacaacaataacactgaCTTACAAGAGCTTATTCACACACCCAACATAAAGAACTGCAGCAGAGTTAAggcatattttttattttagattttagataaGTGATTATTGTCATAGATGTGAAATCTACACAACATGGCAACAATTCAGATTAGAATACAAGCATGACTCAAATATAAACACTAAAGTTAGTCACATTTTAACAGCAGTGTTAGAAACTAAAACGAACAGTtactaatcatttaaaaaaacatcagaacACAAACTGGAAAATCGGTCAACTACGTAGTTCTGGGTAAGGATTCTGCTAATAATAAAGTCAAGAACTGCAACAGTATTTCACCATAgtaatgtacttaatgtgtggTACAGATCTGTGACGTTCACTGCTGGAGAATGGAATCAGACACAGAACTGTGTGAATTTCCCAGACAAACACTGATGTCTAACTGCTGTGTCTGACAAAGATCTACTCCTGCAGTTTCCTGCAGTCACAAGTATTTCAAAGTCAGCAGCTGTCTTCTGGAAgttcttaaaaatgtttataatctGAGCTAAGGAAAATTTGCATGGACTACTATGGTAGTGACTACTTTGTGGTTTGATTTGGACTGCCTTTTTGGGGGTGTAAAATGGAGATGTAGTCATCCATAAATCACACCCTCACCATGTCATGACTTTTTCTGGTGACCATAAACAAAACAGTAGGAGCGGACTGACTGGTACAATACAAAGATACATAGAGCACTGATACAAATAACTATTAACATGATTgggtaattttaatttaaaaatacaatctagTACAGATCCTCTCTAGTATGAATACACTGCTGAGATTTAAGGTTGCTTGCCTAACTGAAGTTTCTCCCCCACATGAGAGAGGTGGTGACGTTTAAGGTTTGATGCCTGACGGAAGCTCTTCCCACAATGAGAGCAGCTGTACGGTTTCTCCCCAGTGTGAATGCGCGTGTGATCTTTAAGGTTTGATTCCCGAGCGAAGCTCTTCTCACACAGGGTGCATTTGTATGGTTTCTCCCCCGTGTGACAGTGCTGGTGACGTCTAAGGTTTGTTACATGATTGAAGCCCTTCCCACACAGGGTGCAGCTGAAAGGtttcttctctgtgtgtgtgtactggtgAGATTTAAGGTGTTTTTTCAGAGAGAAGCTTGTCCCACACTTAGAGCAGCTGTAGGGTTTCtcccctgtgtgaatgcgctggtgagatttaaggCTCTCTGTGCTACTATAAATCTTTCCACACAGGGTGcagctgtacattttctgtcctgtgtgaatgcgctggtgtaaTTTAAAGTGATCTGCCCGACTGTatttcttcccacactgggtgcagctgtatggtttttctcctgtgtgaatgcgcttgTGAATTATCAGACTTCTTCCACgagtgaaactcttcccacacaggCTACAGGAGTGCACTCTTTTCCTTGTAggaatgcatttgtgtttttttaagcttgCAGAGTTCCTGTACGTTTTCTCACACTGAGGGCAGCGATGGCAGCCCTGATGTTTCCTAGTTGTGTTTGAGGGGGGAGAGTCAGAGCTGGAGGGTCCAGGACGCAGCTGTCTGCCCTGTGAAGATGGGCTCTCACCCCTCACTGTACTGTCACTGCCTCCGCTGAGCCCAGTCCTCAAGGCACCAGAGTCGCTGTCACACAGTCCATCTTCTGGAAGCTGTGGTTCCAGTTTACAGAGGCCTCCTGTAATATTGTCTAGTTTAAGATTACAGGGTTCATCTTTCAAACCTGTATGCATTTCCCCTCAAGGCACCAGAGTCGCTGTCACACAGTCCATCTTCTGGAAGCTGTGGTTCCAGTTTACAGAGGCCTCCTGTAATATTCTCTATTCTAAGATCACAGGGTTCATCTTTCACAACTGTATGCATTTCCCACTCCAGCTCTCTGTCCTCTGTCTTAATGTGAACAGACGCAACACTGGGCTCACACTGTGTACTGGTAGAGTCTGGCTcagcaccagctgcactgggtccacactcagatCCCAGTGCCCTGAGTCCCTGCGTTAAACCCACAGTCTGTGGTTCCACCATGTGGCCAGACTCCAGTCCACTGATCTCCATTTCACCATGTCTGCTCTCGTGCTGCTCAGACAGACTCTTGTTGTCGTCAgtagctgtgggctctgtgtcctgcctcagactggagccccACTCCTGCTCACAGGGATGCTGCCCAGTGGGagccctttccccagagtcagggagagcgctgGTCTCTATAG

Function

GO:

id name namespace
GO:0140110 transcription regulator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166255 lncRNA upstream 91757 4016127 ~ 4017756 (+) True G132586
TU166241 lncRNA upstream 113784 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA upstream 116609 3992264 ~ 3992904 (+) True G132574
TU166220 lncRNA upstream 131851 3903675 ~ 3977662 (+) False AMCG00011771
TU166215 lncRNA upstream 211917 3896554 ~ 3897596 (+) True AMCG00011770
TU166337 lncRNA downstream 106617 4218547 ~ 4218983 (+) True G132655
TU166343 lncRNA downstream 147614 4259544 ~ 4322290 (+) True G132660
TU166417 lncRNA downstream 640792 4752722 ~ 4752923 (+) True G132722
TU166421 lncRNA downstream 651759 4763689 ~ 4763888 (+) True G132726
TU166429 lncRNA downstream 663224 4775154 ~ 4775539 (+) True G132734
AMCG00011777 mRNA upstream 134374 3970320 ~ 3975139 (+) True AMCG00011777
AMCG00011776 mRNA upstream 144330 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011771 mRNA upstream 166614 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011774 mRNA upstream 186887 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011769 mRNA upstream 194611 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011782 mRNA downstream 52903 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011781 mRNA downstream 63505 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011785 mRNA downstream 131242 4243172 ~ 4249417 (+) True AMCG00011785
AMCG00011793 mRNA downstream 482030 4593960 ~ 4601353 (+) True AMCG00011793
AMCG00011794 mRNA downstream 534380 4646310 ~ 4648415 (+) True AMCG00011794
TU166232 other upstream 166151 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 171121 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 213334 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 904916 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 1104851 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 1647928 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1716871 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1775075 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1775075 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 2144020 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile