RNA id: TU166381


Basic Information

Item Value
RNA id TU166381
length 619
RNA type TUCP
GC content 0.48
exon number 4
gene id G132693
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4474605 ~ 4476979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGGGAAGGTGTGTAGCCGGACCTGTTGGAAGCAGGAGGAGATGAGATCGGGTCTATAGGCGAATCATTGCACCCACAAAATACTGTTCCTCCAATGCATCGGCGCTGTTTGGGTCGCAGTTTCATCTAAGTaTCTGAGAGTCTGCCATTGACTGTACAGTTGGGTGCCATGGATTCTCTGATGAGTGCTGTAGCCCCGCGGCCCCTGGCCCCTGTGAAGAAGCCCTCAGAGGTGGACTTCCGCTCAGGGGCCGGCCTGGAGCAGCTGTCCGCCTTGGTGCAGGAGTTTGTCCAGTTGGAACAGAGGGAGTTTGGGGACCAGACTGCATTGGAAGTACACACGGCTAAGGATTTCATCTTCAACATGCTAGCACCAGGAAGCAAAAAATCTCTCAGGCTGTGACATCACGCTGTGACATCATGCTGGAAAACACATTCTGATTGGACAGCTCTTGTTGGTGTCATCATTTATATCATGATGTCAGCACAAAATGTGTGCTGCATAAACTATTCTCTTATGTAAACGAGTGTTAAGGGATATTCACACAACAGCAATAAATCACTGTATCTTTGTCAcctttttcttctctgcttgGAATAAATAATTGGGAAGAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166357 lncRNA downstream 225572 4244942 ~ 4249033 (-) True G132672
TU166353 lncRNA downstream 238306 4232476 ~ 4236299 (-) True G132669
TU166352 lncRNA downstream 251631 4222700 ~ 4222974 (-) True G132668
TU166297 lncRNA downstream 375721 3968490 ~ 4098884 (-) False G132621
TU166313 lncRNA downstream 384403 4078449 ~ 4090202 (-) True G132633
TU166399 lncRNA upstream 49304 4526283 ~ 4526792 (-) True G132707
TU166402 lncRNA upstream 87236 4564215 ~ 4568124 (-) True G132710
TU166403 lncRNA upstream 95746 4572725 ~ 4572948 (-) True G132711
TU166408 lncRNA upstream 215771 4692750 ~ 4693242 (-) True G132716
TU166409 lncRNA upstream 217459 4694438 ~ 4694805 (-) True G132717
AMCG00011791 mRNA downstream 10519 4457441 ~ 4464086 (-) True AMCG00011791
AMCG00011788 mRNA downstream 99511 4364847 ~ 4375094 (-) True AMCG00011788
AMCG00011789 mRNA downstream 119362 4344336 ~ 4355243 (-) True AMCG00011789
AMCG00011787 mRNA downstream 147982 4293210 ~ 4326623 (-) True AMCG00011787
AMCG00011790 mRNA downstream 181702 4275059 ~ 4292903 (-) True AMCG00011790
AMCG00011792 mRNA upstream 5172 4482151 ~ 4492557 (-) True AMCG00011792
AMCG00011799 mRNA upstream 244776 4721755 ~ 4731461 (-) True AMCG00011799
AMCG00011800 mRNA upstream 268261 4745240 ~ 4745536 (-) True AMCG00011800
AMCG00011798 mRNA upstream 289551 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011797 mRNA upstream 301350 4778329 ~ 4780490 (-) True AMCG00011797
TU166351 other downstream 255622 4218549 ~ 4218983 (-) True G132667
TU166322 other downstream 308166 4164631 ~ 4166439 (-) True G132642
TU166201 other downstream 596208 3877046 ~ 3878397 (-) True AMCG00011765
TU165976 other downstream 1267251 3201370 ~ 3207354 (-) True G132352
TU165964 other downstream 1300769 3169761 ~ 3173836 (-) False AMCG00011741
TU166389 other upstream 6287 4483266 ~ 4492313 (-) False AMCG00011792
TU166404 other upstream 116714 4593693 ~ 4594449 (-) True G132712
TU166493 other upstream 527186 5004165 ~ 5004609 (-) True G132788
TU166568 other upstream 665486 5142465 ~ 5146805 (-) False AMCG00011811
TU166801 other upstream 1224107 5701086 ~ 5703917 (-) True G133026

Expression Profile