RNA id: TU166444


Basic Information

Item Value
RNA id TU166444
length 312
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G132747
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4811547 ~ 4811858 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcccagagtccagatcattaatatagattagaaaaagcacaggccctagtactgatccctgtggaactccactaacaacctcactccagttagaagcgactcctctaatcgacaccctctgtttcctagacatcaaccagttcataatccatctacatACATTACCCTGAGtgcctgcagcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagctttttgaaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaaaaattataataaattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166409 lncRNA downstream 116742 4694438 ~ 4694805 (-) True G132717
TU166408 lncRNA downstream 118305 4692750 ~ 4693242 (-) True G132716
TU166403 lncRNA downstream 238599 4572725 ~ 4572948 (-) True G132711
TU166402 lncRNA downstream 243423 4564215 ~ 4568124 (-) True G132710
TU166399 lncRNA downstream 284755 4526283 ~ 4526792 (-) True G132707
TU166456 lncRNA upstream 38862 4850720 ~ 4851002 (-) True G132759
TU166525 lncRNA upstream 207105 5018963 ~ 5019423 (-) True G132819
TU166545 lncRNA upstream 229125 5040983 ~ 5069667 (-) True G132833
TU166578 lncRNA upstream 350327 5162185 ~ 5163811 (-) True G132862
TU166644 lncRNA upstream 478316 5290174 ~ 5325922 (-) False AMCG00011812
AMCG00011802 mRNA downstream 3858 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 31057 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011798 mRNA downstream 41743 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011800 mRNA downstream 66011 4745240 ~ 4745536 (-) True AMCG00011800
AMCG00011799 mRNA downstream 80086 4721755 ~ 4731461 (-) True AMCG00011799
AMCG00011809 mRNA upstream 315747 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011811 mRNA upstream 330612 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011810 mRNA upstream 354310 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011812 mRNA upstream 490501 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011818 mRNA upstream 549479 5361337 ~ 5399035 (-) True AMCG00011818
TU166404 other downstream 217098 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 319234 4483266 ~ 4492313 (-) False AMCG00011792
TU166381 other downstream 334568 4474605 ~ 4476979 (-) True G132693
TU166383 other downstream 334568 4474605 ~ 4476979 (-) False G132693
TU166351 other downstream 592564 4218549 ~ 4218983 (-) True G132667
TU166493 other upstream 192307 5004165 ~ 5004609 (-) True G132788
TU166568 other upstream 330607 5142465 ~ 5146805 (-) False AMCG00011811
TU166801 other upstream 889228 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 895425 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 906720 5718578 ~ 5720981 (-) False AMCG00011831

Expression Profile