RNA id: TU166525


Basic Information

Item Value
RNA id TU166525
length 461
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G132819
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5018963 ~ 5019423 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacactctgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctctctcatgcgttacttcatctagttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166456 lncRNA downstream 167961 4850720 ~ 4851002 (-) True G132759
TU166444 lncRNA downstream 207105 4811547 ~ 4811858 (-) True G132747
TU166409 lncRNA downstream 324158 4694438 ~ 4694805 (-) True G132717
TU166408 lncRNA downstream 325721 4692750 ~ 4693242 (-) True G132716
TU166403 lncRNA downstream 446015 4572725 ~ 4572948 (-) True G132711
TU166545 lncRNA upstream 21560 5040983 ~ 5069667 (-) True G132833
TU166578 lncRNA upstream 142762 5162185 ~ 5163811 (-) True G132862
TU166644 lncRNA upstream 270751 5290174 ~ 5325922 (-) False AMCG00011812
TU166640 lncRNA upstream 287074 5306497 ~ 5328724 (-) True AMCG00011812
TU166732 lncRNA upstream 611671 5631094 ~ 5631526 (-) True G132977
AMCG00011802 mRNA downstream 211274 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 238473 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011798 mRNA downstream 249159 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011800 mRNA downstream 273427 4745240 ~ 4745536 (-) True AMCG00011800
AMCG00011799 mRNA downstream 287502 4721755 ~ 4731461 (-) True AMCG00011799
AMCG00011809 mRNA upstream 108182 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011811 mRNA upstream 123047 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011810 mRNA upstream 146745 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011812 mRNA upstream 282936 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011818 mRNA upstream 341914 5361337 ~ 5399035 (-) True AMCG00011818
TU166493 other downstream 14354 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 424514 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 526650 4483266 ~ 4492313 (-) False AMCG00011792
TU166381 other downstream 541984 4474605 ~ 4476979 (-) True G132693
TU166383 other downstream 541984 4474605 ~ 4476979 (-) False G132693
TU166568 other upstream 123042 5142465 ~ 5146805 (-) False AMCG00011811
TU166801 other upstream 681663 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 687860 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 699155 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 721790 5741213 ~ 5760287 (-) False AMCG00011845

Expression Profile