RNA id: TU166545


Basic Information

Item Value
RNA id TU166545
length 2922
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G132833
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5040983 ~ 5069667 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTTCTGAGGTGATGTGCAGAGCAAGTGTTTTAGTTTCATTTCCAGTGCCAGTGGACTGTCACCTTCCTCATCTTTTAGGCAGGCCTGCTGAGAGAgttgtttctttctctccacTTAGGGCATCTGTGAAATCACTGAGTGGAGCCAAGACATCCCGAACAGTTTCCAAAGTTGTCATGTTTGTGTCTCTGGGCATCAGGTGCCACTTCTTCCTGTCCTCAGCCAGAACAGCAGAGACTGCTTGTTGCTGCTCACAGAAGCCTTCCTCCATATCATAGgagctgtacAGGCCAGTGCTCTCCCTGACTCTGAGGAAAGAGCTCCCACTGAGCAGCAGCCCTGTGAGCAGGAGTggggctccagtctgaggcaggacacTGAAGATAAAGAGGGGCTaactgagcagcccaggagtaGAACCACTGAAGAGGAGCTCAGTGGCCTGGAGTCTGGCCACAGAGCAGAGCCACAGACTGAGGGTTTAGCACTGGGatctgagtgtggacccagtgcagctgATGCTGAGCTGGGCTTTGCTGGAACACAGCCTGAACCCAGTGTGGAGTCTGATCACATTAAAACAGAGTCCAATGAATCGGAGATAGACACTCACACTCTTCTGAAATATGGACTCTGTGATCCTAAACTGGAGAATATTACAGGAGGCCTCAGTGACCTGGAACCTGAGCTCCGTGTTCAGTGTGGAACCAAATCTGTTGCCTTGAAAACAGAGCTCAGTGCAGGGAGGGACCAATCGACACAGTGTAGACAGCTGCGTCCCAGACGCTCCAGCTCCCACACTCCCTCCAGCTCCCACACTCACCCCTCATGGGAAACTGTGAAACATCAGGGCTGCCAttgctgctcccagtgtgggaagaactTCAGTCAAGCAGGACGCCTTCAATCTCACCAGCGCGTTCATACGAAAAAGAAACCATACTTTTGCCGCCaatgtgggaagagtttctctcaGCGAGGAGACCATCAGAAACATCAGTGCATTCGCACAGGAAAGAAACCATACTGCTGTACCCATTGTGGGAGGAGCTTCAGCAATGTACGACACTTTGAATCTCACCAGCACATTCATACAGGAGAGAGGCCATACTGCTGcccccagtgtgggaagagcttcactcAGCAAGGAAACCTTAAAAAACATctgcgcattcacacaggagagaaaccatacagctGTACTCAGTGTGGGAAGAACTTCAGTGTGTTAGAAAACCTTAACAATCAtcagcacattcacacaggagagaaaccatacaagtgtacccagtgtgggaaggcTTTCACTCAGTCAGGAAGCCTTAAATATCACCAGCgtattcacacaggagagaaaccattcagctgctcccagtgtgggaagtgctTCACTTTGTTAGGAAATCTTCAatctcaccagcgcattcacacaggagagaaaccattcagctgctcccagtgtgggaggtgcttcactTTGTTAGGAAACCTTAAAACCCATCAGCGccttcacacaggagagaagccATTCTggtgctcccagtgtgggaagtgctTCACTCACTTGGCAAGCCTTAAACATCACcagtgcattcacacagaagagatcacacacaatacaatttaagaaaGGAGGAGGCGAGcctagaaatacaaaatgttacatttttaagcaGTCCTTTTTATGTTCAAAAGTTTAATCTGCTAATATAAAATTGTGTTGctgaagtgaaaatgaaaactgcatcATTACTAACGAAAACAACCTGACTCCCTGCCAACAACAAGGTGTACAATATGAGATTGAGAGTATCAGTCGTGACAATTCACTGGAATTGTGAATTTCATAGACTTACTTTCATCTGAATAATGAAACTGGTTTTGATGCAGAAGTTTtgcttctttcatttttatatttaaacacgAGTTTTGGAACTTcaagacatgcatttttttaaatacatagtaCAGCTTGTGGCAAATTTAACCTAAACTGAAGGGCAATATAAGGTCTTGATTGTAAATGTACGAGGGCTCTTCAAGCTATTAGCATATGCAAGTCAGGTTGCGCTCCTAAAACCCACGGTGTGTAACAATGAGAGGGGAGCTGACTTCCTGTTCCGGGTGATTGATTCATTTTGTGTTGGGTTGTTGCGGGAAAGAGACTTGCTGAACTGTTCCTGCTTATTGAACGCACTCCACGCTCAAGGCAGAAAGAGACATTGCTGCACTGCTGCACGTTTAAGGCGGAAGGAGAGATTGCTGTACAGTTTCTGTGTACTGAAGGTGTTCCATGCTCAAGGCTTTAATCTTCAGCCTGGCTTAGCTGACTTTGTACTCTTATGTTACACTGTATGCTTTAGACCCTGCTTCAGGATTCACACGATGAATCGGAATGTATATGCAGAAATGGACGGGAgtgatttgtttccttttgctgtttagtttcttatttgaatgtgttttgttttcttactttgtttgtttattatttcaactATGTAATGTGTTTTGGGCTATAAAGACCTGCCGTAGTGGAAATGAATGCACATGCACAGCAAAGTAAAGTCTGACTCCACTATAATATGCAATagattgtgatttatttatgtactagGCATAACCTACCTGGCGCCCAAACAACATTGTTTATAAATACGCCGCCACAAGCTTATTGatgttttacattatgaaaGTCTTATTACAAccattgtgaaataatttagaATTTATTGAAGGctgtactgtaattattattttacatatcacAGCTCTGGCAACATTTATATTTGGTTTTCATCGTATGATTTAATTTgctgaaaattgtgttttcattatacatttaatgtgtgcTAACTATAGAAATGAACGAAAATGATGATCCTCCTTCTTTAACCTAAGAgttttaaaaaaacaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166525 lncRNA downstream 21560 5018963 ~ 5019423 (-) True G132819
TU166456 lncRNA downstream 189981 4850720 ~ 4851002 (-) True G132759
TU166444 lncRNA downstream 229125 4811547 ~ 4811858 (-) True G132747
TU166409 lncRNA downstream 346178 4694438 ~ 4694805 (-) True G132717
TU166408 lncRNA downstream 347741 4692750 ~ 4693242 (-) True G132716
TU166578 lncRNA upstream 92518 5162185 ~ 5163811 (-) True G132862
TU166644 lncRNA upstream 220507 5290174 ~ 5325922 (-) False AMCG00011812
TU166640 lncRNA upstream 236830 5306497 ~ 5328724 (-) True AMCG00011812
TU166732 lncRNA upstream 561427 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 637616 5707283 ~ 5793845 (-) False G133032
AMCG00011802 mRNA downstream 233294 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 260493 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011798 mRNA downstream 271179 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011800 mRNA downstream 295447 4745240 ~ 4745536 (-) True AMCG00011800
AMCG00011799 mRNA downstream 309522 4721755 ~ 4731461 (-) True AMCG00011799
AMCG00011809 mRNA upstream 57938 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011811 mRNA upstream 72803 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011810 mRNA upstream 96501 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011812 mRNA upstream 232692 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011818 mRNA upstream 291670 5361337 ~ 5399035 (-) True AMCG00011818
TU166493 other downstream 36374 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 446534 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 548670 4483266 ~ 4492313 (-) False AMCG00011792
TU166381 other downstream 564004 4474605 ~ 4476979 (-) True G132693
TU166568 other upstream 72798 5142465 ~ 5146805 (-) False AMCG00011811
TU166801 other upstream 631419 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 637616 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 648911 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 671546 5741213 ~ 5760287 (-) False AMCG00011845

Expression Profile