RNA id: TU166578


Basic Information

Item Value
RNA id TU166578
length 1627
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G132862
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5162185 ~ 5163811 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCAGAATAATGCAGGGCAGCAGGAATCCCATCACAATGGTGCCGATCTTAAACTTGGCGTACCTGCTGCTGACAGGATACTGCTCCAGACAATGTCTTTGATTGGGATCGTACACGGAGGGATAGAGTCCGCTCAGGCAGAAGAGGAAGATCACCACCCACACCCCCAGGCTGACGACCAGAGCCAACTTGACGGTCCGGAATCTCCTGCTCCTCAGCGGGTGGACGATGGCGAGGTAGCGGTCCAGCGCGATCAGGCAGAGGAAGACGATGCTCGCGTATAGGTTGATGTAGAAGAGGTACCCGACAAAGTCACAGATGGTGTCCCCATACGTCCACATGTGGTTCTTCTTCAGGTAGATGATCCACAGCGGCAGGGTGAGGATCTGCAGAAGATCGGACACCAGCAGGTTGAGGATGAAGATGGGCATGGTGTTGCCAGCGCGTAGGAGTTGGTAGAGCCCCCACAGCGAGAGCAGGTTAGCAGGCAGCGCCAGTACAAAGGTGACACTGTAGATGGACATGAGTCCCAACTGGTCACTGGTCAAGTTGAAGGAACAGTTCATATTTGTCACCCCCATCTTGTGGATTATGAGAATCGGGTGCAAGTGTGGTCATGAAAGGAAGGTCCTGATATACGTGGTCTGTTTTCTTTGCCTGTTTTTAGTCTTCTGCTAATAAAGGATCTACTAGGCAAGTTCTGTGTTTCTAAACATCAACTGAAAGACACCTCAGAGGCCAAATAGTGTGGAAACGTTTGTTCCAGGAAAACCACATGGTGACGTGATCATGGTTCTTATATTATGAATAGCAGCCATTCAGCAGATCCATTCAAATAATCCCATCATTCAGAAAAGCTCCTCTGTCACTGCTGTGGTCTGCTTATGGGCAATTACAACTCAGTCGACCATGTGGGGGACTTTTTTTAAGCTACAAGTTCATGGCTGCATGACCTTTCTTTGCTCACATCCCTGAAGACTCTAAATGTTGAGACACATAAGCAGAACAATGGTAATTAATAACTAAAGTACCTTCCATGCAATTTGTAAAGAGTATTTGCTAAAATATTACCCcttttcagtcattttattgtcattattgattgatttgaaagaCTGACACATCTCTccaaaacaacatacatttgtacccattcatgcttttttgttttgttttgacgtAAGGAATCTGGGTAAGGTTCATTGCCCAAGGCTTCAACACCAGCGGTTCATGGTTATAAGTCCTTTTGTTGCATTAATTCTGTATAATGCATATGATTCTCTGATTTCTGATAGTCAAtcaaagtttttaatatatgcaCATTAAATTAGAGAGACGAAAAATCAAATGATCAGGATCATAACTTTCAATTCACCTCTAATTCCCATTGTATTCTCACATAGGGTTTAGTTCACATTTGCTTTTGAATGCAGGATTTTGGTAAAACACATTAATCAAAGTAACTGACACTGTGTATTTTAGTGTctgctgttttcattataatttagtttggaACAATATGCGGGGTCCTGCATAGGATTGCCAGATCCATTTAAtctttaaactaaaaaaaacatcacagtgaAAATTGAGGATTAAGTATTTCCTGTAATTATACTGTTATAG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166545 lncRNA downstream 92518 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 142762 5018963 ~ 5019423 (-) True G132819
TU166456 lncRNA downstream 311183 4850720 ~ 4851002 (-) True G132759
TU166444 lncRNA downstream 350327 4811547 ~ 4811858 (-) True G132747
TU166409 lncRNA downstream 467380 4694438 ~ 4694805 (-) True G132717
TU166644 lncRNA upstream 126363 5290174 ~ 5325922 (-) False AMCG00011812
TU166640 lncRNA upstream 142686 5306497 ~ 5328724 (-) True AMCG00011812
TU166732 lncRNA upstream 467283 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 543472 5707283 ~ 5793845 (-) False G133032
TU166818 lncRNA upstream 569283 5733094 ~ 5758860 (-) False G133032
AMCG00011811 mRNA downstream 11972 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011809 mRNA downstream 28641 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011802 mRNA downstream 354496 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 381695 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011798 mRNA downstream 392381 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011810 mRNA upstream 2357 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011812 mRNA upstream 138548 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011818 mRNA upstream 197526 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011822 mRNA upstream 238834 5402645 ~ 5460948 (-) True AMCG00011822
AMCG00011821 mRNA upstream 364472 5528283 ~ 5529716 (-) True AMCG00011821
TU166568 other downstream 15380 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 157576 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 567736 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 669872 4483266 ~ 4492313 (-) False AMCG00011792
TU166381 other downstream 685206 4474605 ~ 4476979 (-) True G132693
TU166801 other upstream 537275 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 543472 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 554767 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 577402 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 577402 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile