RNA id: TU166732


Basic Information

Item Value
RNA id TU166732
length 433
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G132977
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5631094 ~ 5631526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTTGTGCATCTGCAATGgcttcctttattttctgtattatttgtttcagCTGTTTCTCTTCCAATTCCACAATGCTGTTTTCTGTTGAAAAGTGCTCTGTGATTTTTCCAAAGATCCATTTCTTCACAAAATCTTCATAGGACTGAATATACTTCACATAGTTTTCAAACTTTTCTTCTGAAAGCAGCTGTTTCAGAACGGAGAACTGGAAAAATGACCGGGTGCTATAATCTACAGAGCTCTTTCCCGTCAGCATTTCATCCACAATATCTGGACCCAAGCATTTGGTGACATACGCCCTTACTGCAGGTCTAAGGCAGAGTTGAGTAAACTCTTCAGCTTTCTTCTGGCACTGGTCTCTTTCATGGAATAGATCCTTGACATTTGCCATTATAAGTTTTTTTAAGAAGCACCATGGAAGAGATTTCAG

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166640 lncRNA downstream 302370 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 305172 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 467283 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 561427 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 611671 5018963 ~ 5019423 (-) True G132819
TU166819 lncRNA upstream 75757 5707283 ~ 5793845 (-) False G133032
TU166818 lncRNA upstream 101568 5733094 ~ 5758860 (-) False G133032
TU166824 lncRNA upstream 101568 5733094 ~ 5733877 (-) False G133032
TU166875 lncRNA upstream 222411 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 225137 5856663 ~ 5857165 (-) True G133080
AMCG00011821 mRNA downstream 101378 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011822 mRNA downstream 170146 5402645 ~ 5460948 (-) True AMCG00011822
AMCG00011818 mRNA downstream 232059 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011812 mRNA downstream 324161 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011810 mRNA downstream 412038 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011827 mRNA upstream 4595 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011825 mRNA upstream 12187 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011832 mRNA upstream 27263 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011833 mRNA upstream 60528 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011831 mRNA upstream 75867 5707393 ~ 5720148 (-) True AMCG00011831
TU166568 other downstream 484289 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 626485 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 1036645 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 1138781 4483266 ~ 4492313 (-) False AMCG00011792
TU166383 other downstream 1154115 4474605 ~ 4476979 (-) False G132693
TU166801 other upstream 69560 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 75757 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 87052 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 109687 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 109687 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile