RNA id: TU166818


Basic Information

Item Value
RNA id TU166818
length 575
lncRNA type read_through
GC content 0.51
exon number 5
gene id G133032
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5707283 ~ 5793845 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTCCTTCAATACCTGTGCAGGTGAGGGAGCTGGAGAACGAGCTGGAGGCAGAACAAAAGAAGAGCACAGAATGTGTGAAGGGAGTCCGCAAATACGAGAGACGTGTCAAGGAGCTCACCTACCAGACGGAGGAGGACCGTAAGAATATAATCCGTCTGCAGGACCTGGTGGACAAGCTGCAGCTGAAGGTGAAGGCCTACAAGAGGTCTGCTGAGGAAGCTGAGGAGCAGGCCAACACTAACCTGGGCAAGTTCCGCAAGCTGCAGCACGAGCTGGACGAGGCCGAGGAGAGGGCCGACATCGCCGAGTCGCAGGTCAACAAGCTGCGCGCCAAGAGCCGTGACATAGGCTCAAAGAAAGGGCTAAATGAAGAGTGAAGCTCTCAGACGGACCTTTCTGAAAACCTCTTGTCTGCTGTGCTTTAGTCTCCCCTCTGCTTTCTCTCTGCCCTTCCTGTAATCCTGTAgaataaaatgaatttgaaaaCCTCTTGTCTGCTGTGCTTTAGTCTCCCCTCTGCTTTCTCTCTGCCCTTCCTGTAATCCTGTAgaataaaatgaatttgaaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166732 lncRNA downstream 101568 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 404370 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 407172 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 569283 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 663427 5040983 ~ 5069667 (-) True G132833
TU166875 lncRNA upstream 95077 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 97803 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 101536 5860396 ~ 5860689 (-) False AMCG00011842
TU166884 lncRNA upstream 102264 5861124 ~ 5865887 (-) False AMCG00011842
TU166959 lncRNA upstream 137879 5896739 ~ 5897003 (-) True G133147
AMCG00011831 mRNA downstream 12946 5707393 ~ 5720148 (-) True AMCG00011831
AMCG00011833 mRNA downstream 36950 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 52488 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 86646 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011827 mRNA downstream 94978 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011844 mRNA upstream 3718 5762578 ~ 5764790 (-) True AMCG00011844
AMCG00011846 mRNA upstream 20629 5779489 ~ 5797225 (-) True AMCG00011846
AMCG00011840 mRNA upstream 43435 5802295 ~ 5810650 (-) True AMCG00011840
AMCG00011847 mRNA upstream 53115 5811975 ~ 5818663 (-) True AMCG00011847
AMCG00011848 mRNA upstream 67176 5826036 ~ 5833355 (-) True AMCG00011848
TU166828 other downstream 12113 5718578 ~ 5720981 (-) False AMCG00011831
TU166823 other downstream 23561 5707283 ~ 5709533 (-) False G133032
TU166801 other downstream 29177 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 586289 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 728485 5004165 ~ 5004609 (-) True G132788
TU166874 other upstream 93020 5851880 ~ 5852590 (-) True G133075
TU166988 other upstream 196427 5955287 ~ 5957925 (-) True AMCG00011860
TU167012 other upstream 233554 5992414 ~ 5993018 (-) True G133183
TU167038 other upstream 319510 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 466660 6225520 ~ 6227193 (-) False AMCG00011886

Expression Profile