RNA id: TU166819


Basic Information

Item Value
RNA id TU166819
length 1273
lncRNA type read_through
GC content 0.55
exon number 8
gene id G133032
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5707283 ~ 5793845 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACATTGCTtgtaaaattgcttttattCTACAGCATTACAGGGGCAGAGAGAAAGCAGAGGGGAGACTAAAGCACAGCAGACAAGAAGTTTTCAGAAAGGTCCGTCTGAGAGCTTCACTCCTCATCAAGCCCTtCTTTGCGCCTATGTCTCGGCTCTTGGCGCGCAGCTTGTTGACCTGCGACTCGGCGATGTCGGCCCTCTCCTCGGCCTCGTCCAGCTCGTGCTGCAGCTTGCGGAACTTGCCCAGGTTAGTGTTGGCCTGCTCCTCCTGCCACACAGAGACAGCACAGAGTCACAGCCTGGCACAGAGCACTGCAGCGACTGACAGTCACTGGAAAACACTGGAGCTTGTGCAGCAGGGCCAGCATTGAGTCCAGATACTTACAGCCTCCTCAGCAGACCTCTTGTAGGCCTTCACCTTCAGCTGCAGCTTGTCCACCAGATCCTGCAGGCGGGTCATATTCTTACGGTCCTCCTCCGTCTGCACaaacacaggacacacacagtcagacacagtGCAGCCTCACACGCAGGGCAGCAGCACTGGGAGCCTCACAGGCAGGCCGCCACTCAAGAGGAGGTCAGGGGTACCTGGTAGGTGAGCTCCTTGACGCGTCTCTCGTATTTGCGGACTGCCTTCACACATTCTGTGTTCTTCTTCTGTTCTGCCTCCAGCTCGTTCTCCCGGGCTTCCAGCTTCTGTATCTGCTTCTTGCCACCCTTCATGGCGATCTGCTCAGCCTCGTCCAGGCGGTGCTGCAGGTCCTTGATGGTCTGCtccatgtttttcttcatgcGCTCCAGGTGAGGGAGCTGGAGAACGAGCTGGAGGCAGAACAAAAGAAGAGCACAGAATGTGTGAAGGGAGTCCGCAAATACGAGAGACGTGTCAAGGAGCTCACCTACCAGACGGAGGAGGACCGTAAGAATATAATCCGTCTGCAGGACCTGGTGGACAAGCTGCAGCTGAAGGTGAAGGCCTACAAGAGGTCTGCTGAGGAGGCTGAGGAGCAGGCCAACACTAACCTGGGCAAGTTCCGCAAGCTGCAGCACGAGCTGGACGAGGCCGAGGAGAGGGCCGACATCGCCGAGTCACAGGTCAACAAGCTGCGTGCCAAGAGCCGGGATGTAGGCGCAAAGAAAGGCCTGGATGAGGAGTGAAGCTCTCTGATGGACCTTTCTGGAAACCTCTTGTCTGCTGTGCTTCAGTCTCCCCTCTGCTTTCTCTCTGCCTTTCCTGTAATGCTGTAgaataaaatgaatttgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166732 lncRNA downstream 75757 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 378559 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 381361 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 543472 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 637616 5040983 ~ 5069667 (-) True G132833
TU166875 lncRNA upstream 60092 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 62818 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 66551 5860396 ~ 5860689 (-) False AMCG00011842
TU166884 lncRNA upstream 67279 5861124 ~ 5865887 (-) False AMCG00011842
TU166959 lncRNA upstream 102894 5896739 ~ 5897003 (-) True G133147
AMCG00011833 mRNA downstream 11139 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 26677 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 60835 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011827 mRNA downstream 69167 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011821 mRNA downstream 177567 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011840 mRNA upstream 8450 5802295 ~ 5810650 (-) True AMCG00011840
AMCG00011847 mRNA upstream 18130 5811975 ~ 5818663 (-) True AMCG00011847
AMCG00011848 mRNA upstream 32191 5826036 ~ 5833355 (-) True AMCG00011848
AMCG00011841 mRNA upstream 50436 5844281 ~ 5846532 (-) True AMCG00011841
AMCG00011842 mRNA upstream 66664 5860509 ~ 5872000 (-) True AMCG00011842
TU166801 other downstream 3366 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 560478 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 702674 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 1112834 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 1214970 4483266 ~ 4492313 (-) False AMCG00011792
TU166874 other upstream 58035 5851880 ~ 5852590 (-) True G133075
TU166988 other upstream 161442 5955287 ~ 5957925 (-) True AMCG00011860
TU167012 other upstream 198569 5992414 ~ 5993018 (-) True G133183
TU167038 other upstream 284525 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 431675 6225520 ~ 6227193 (-) False AMCG00011886

Expression Profile