RNA id: TU166823


Basic Information

Item Value
RNA id TU166823
length 435
RNA type TUCP
GC content 0.55
exon number 3
gene id G133032
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5707283 ~ 5793845 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGCTCCCAGTGTCGCTGCCCTGTGTGTGAGGCTGAgctgtgtctgactgtgtgtgtcctgtgtttGTGCAGACGGAGGAGGACCGTAAGAATATGACCCGCCTGCAGGATCTGGTGGACAAGCTGCAGCTGAAGGTGAAGGCCTACAAGAGGTCTGCTGAGGAGGCTGAGGAGCAGGCCAACACTAACCTGGGCAAGTTCCGCAAGCTGCAGCACGAGCTGGACGAGGCCGAGGAGAGGGCCGACATCGCCGAGTCACAGGTCAACAAGCTGCGTGCCAAGAGCCGGGATGTAGGCGCAAAGAAAGGCCTGGATGAGGAGTGAAGCTCTCTGATGGACCTTTCTGGAAACCTCTTGTCTGCTGTGCTTCAGTCTCCCCTCTGCTTTCTCTCTGCCTTTCCTGTAATGCTGTAgaataaaatgaatttgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166732 lncRNA downstream 75757 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 378559 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 381361 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 543472 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 637616 5040983 ~ 5069667 (-) True G132833
TU166818 lncRNA upstream 23561 5733094 ~ 5758860 (-) False G133032
TU166824 lncRNA upstream 23561 5733094 ~ 5733877 (-) False G133032
TU166875 lncRNA upstream 144404 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 147130 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 150863 5860396 ~ 5860689 (-) False AMCG00011842
AMCG00011833 mRNA downstream 11139 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 26677 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 60835 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011827 mRNA downstream 69167 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011821 mRNA downstream 177567 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011843 mRNA upstream 25496 5735029 ~ 5740052 (-) True AMCG00011843
AMCG00011845 mRNA upstream 32228 5741761 ~ 5745172 (-) True AMCG00011845
AMCG00011849 mRNA upstream 40935 5750468 ~ 5758838 (-) True AMCG00011849
AMCG00011844 mRNA upstream 53045 5762578 ~ 5764790 (-) True AMCG00011844
AMCG00011846 mRNA upstream 69956 5779489 ~ 5797225 (-) True AMCG00011846
TU166801 other downstream 3366 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 560478 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 702674 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 1112834 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 1214970 4483266 ~ 4492313 (-) False AMCG00011792
TU166828 other upstream 9045 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 31680 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 31680 5741213 ~ 5760549 (-) False AMCG00011845
TU166826 other upstream 33826 5743359 ~ 5758860 (-) True G133032
TU166874 other upstream 142347 5851880 ~ 5852590 (-) True G133075

Expression Profile