RNA id: TU166858


Basic Information

Item Value
RNA id TU166858
length 434
RNA type TUCP
GC content 0.63
exon number 2
gene id G133059
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5828801 ~ 5829532 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCATGCAGCCGGGGAAGCGCTCTGCCCTGGCCTTGGCGAACTCGCTCTCGCTCATCCAGTTGCCCAGCTGGCTCTTGGCGCCCGCTGCTGTCGGAGGCAGGGCATCACGCTGCTGCGGCGTCACCATCACAGTCTTACTCTCCACACGAGCCACATCCTTGGGGTCTGTACGAGCCAGCCAGCAGTTGTTGTATTTCCTCAGTCTCCTGATCACTCCGTCTCTCTCCAAGACGCCTAGGATCTCGGCTGTCTCCTCGGGCTTCCCGGTCATCACGGAGATGCCCGCTGGCCGGCACATCTCCACGGCCCCGCCCACATACTCCTGCACGGAGCGAGGGagcgaggagagagagagcgagagacagcgtacaccccccccacccagagcccagtgcctgagagagagagagagagagagagagagagagaga

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166786 lncRNA upstream 29445 5772063 ~ 5799356 (+) True G133014
TU166754 lncRNA upstream 145993 5682073 ~ 5682808 (+) True G132997
TU166749 lncRNA upstream 147403 5680468 ~ 5681398 (+) True G132993
TU166554 lncRNA upstream 708957 5115107 ~ 5119844 (+) False AMCG00011806
TU166526 lncRNA upstream 762340 5040958 ~ 5066461 (+) True G132820
TU166859 lncRNA downstream 4283 5833815 ~ 5834041 (+) True G133060
TU166865 lncRNA downstream 14732 5844264 ~ 5845059 (+) True G133066
TU166873 lncRNA downstream 22342 5851874 ~ 5852725 (+) True G133074
TU166876 lncRNA downstream 24956 5854488 ~ 5854709 (+) True G133077
TU166889 lncRNA downstream 40413 5869945 ~ 5870156 (+) True G133090
AMCG00011839 mRNA upstream 3935 5818212 ~ 5824866 (+) True AMCG00011839
AMCG00011838 mRNA upstream 36524 5788969 ~ 5792277 (+) True AMCG00011838
AMCG00011830 mRNA upstream 67934 5759880 ~ 5760867 (+) False AMCG00011830
AMCG00011829 mRNA upstream 112655 5715341 ~ 5716146 (+) True AMCG00011829
AMCG00011828 mRNA upstream 124880 5696727 ~ 5703921 (+) True AMCG00011828
AMCG00011835 mRNA downstream 6078 5835610 ~ 5842813 (+) True AMCG00011835
AMCG00011836 mRNA downstream 16610 5846142 ~ 5850008 (+) True AMCG00011836
AMCG00011834 mRNA downstream 42437 5871969 ~ 5883438 (+) True AMCG00011834
AMCG00011837 mRNA downstream 57385 5886917 ~ 5888884 (+) True AMCG00011837
AMCG00011853 mRNA downstream 63992 5893524 ~ 5907174 (+) True AMCG00011853
TU166792 other upstream 67553 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 1885439 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 1890409 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 1932622 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 2624204 3201374 ~ 3204597 (+) True G132271
TU166896 other downstream 57473 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 57473 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 426418 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 654415 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 715856 6545388 ~ 6558485 (+) False AMCG00011909

Expression Profile