RNA id: TU166957


Basic Information

Item Value
RNA id TU166957
length 2441
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G133145
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6067574 ~ 6077385 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttcaaatccattgtggtggagtctaaatgacaattgtgtcactgtccaaatatttatggacctaactgtacatacaacacacacacacacacacacagtaacagtgACAGAGTAACAGTACAGCGCTGTTCTTCCTCAGTGTTTATTGACCAGTGGAGAACACAAACTCaaaactacacaaaaaaaaatcacaacacaGGCTACAGACCGGACTGGGCAGAACTGGGCCGCGCCCCCGCCGTGGTTCCGATGGGCCCCGGTTGCCGTTCCTCTCCCCCGTTTCAGTCAGtgggtgtgtgagagtgtgagagagtggggGCTCAGCTCCAGTTAGCAAGTTCTGTCAGTATGTGTGCAGGTGTGGTTCTGATCGACCTGGTCGTGTGCGCCCTGGAGCCCTGCGGCCCAGTCCCCGTGGATCGGTCAGTGGAGTCAGTGTACTGATTCTGCCCCAGTTGTGTAGGTTCTGTCCGGAGGCGATCGTGTGCTGTGGCTGAGCACACGGGCTCGGTCACGGCCCACTCGTACCACACCTTCCGGCCCGAGTTACAGCGCCAGAACCACAGGCACACCTCCTCACCGCGGGACAGGGGGATGGGCTGCTGcagggggcagagagagagagTGGGAAGAGGATTGGGAACCAGGAGAACATCCCAGCAGGTCAGAGCGGGTCTGGGCTCCGGGGCGGGACTGGGCTGGGTCCAGTCCGAACTCCCTCTGGAAGCGCGGATGGAACACGGGCATACAGAGGAAatcaaacctgagagagagtgtgatgtCACAGTGACGTCATTGTTCTCTGTGACCCATTTGAGTCCTGAACACAGAGTGTGATCTGGGAATTTAATATCAATACAGCGTGGTCAcaatattaacactgactggcacactACTGTGTATTAACACCAGAGACAAACgggcaattattattattatacaatggaataatttatattaattgtgcAGCTCCGCTCCCAGTAAGACCACAGGTGCCGTACTGATGACTGATCTGATATCGGCCTCCTTGTACTACTACGAGTAGTGCTACTAACAATGCCATTAGTAAGCTTACACTACTGTTACTACTGCATGAGTGTTATCAGCACTTACAGCAACGCGAGCAATAATGCTATCAGTGTTATTATTGATAACCGCGATATTTCATATACAAACGATACTAAATAAAAACCACTCCATTGTTTTTCTGGCAATTTCATCAcgtgtgcgtctctctgtaatccggcctctctctctctttctctctctccacctctcttttccctccctccatctctttcCTCTCCACACACCACTGCTCCCCGGACTCACCCGAGCCGGGCCACCGCCCCCAGCGTCTCCGCCACCTCCGGTACCGAGTTCAGATCCCGGCCGCTGGAAACGCGGCTCGCTGAGCTGCCGGACGCCATGTTGGACTCAGACACCGAGAGAGACAGGAAAGGGGCGGCGCGACTGAAGACCGGGCGCATGAATGGGGAAACTGGCGCCATCTTGGCTCTGGAAGCTGGCTGCGGAGGGTGACCTGGAATGTGTGCGCCTGGTTCTTGACTTTCTCCGATCTCGTCCAGGTTGGCAGCGAGGGCCCAGTCCAGGACACTCAGGCTGAGCTGCAGCCCCGCTGTGTGGACAGCAGGACCAGGGCGTCTGCGTTGACTGTGCAGCGCTGCGGGGGGGGCTCTATGTGACGTAACCatttctcctcttcctcaggGTGCCGACACAACCGTGTGTAAAAGAACGTGTAagaatttctagtattgatcagcaactatattgatCTTTTCCAAATGACTCCATTGTGACTCATACAGGCAGAAGGCTAACGAGGCACCCACATACcaaaggtctgacgagccattaCCACCCAGCGGCTGTTCATGATCCAACCCCCCCACTCCATTGGGTTGGCGAGAGGctcccaccagagggaagagcacagccagcagcaccgatcaagagcttcctgatctccttgctgctgtaataactgcctggaggggaggcagccaTTAGGCCTCGTCTGTcagtggacccccagagattcattttctcctacgtgccatccataggagttttttgtttctctcctctgtgcctaatggtttatttatttaaatgttaatttacattattttagatcaCTTACTGTTAACGGTCTGTTTTTAGGTTTActttattctgttatttatgtttattttgctgtgcatctgtaaagcgctctgtggctaccctgcgaagggcactatTCAAATAAAATTTCATTAATTGATTACCTGTAAAATTCTGGAAAAAACTATtacacagaaaatagaggaggaTCTTAATGAAACGAGACGAGGCAgttcatgtcttactaatttttGTAAGTTttctgaacatgcaactgcagctcaGGGCCGGCGCTAcctatactgtttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166935 lncRNA upstream 31588 5992317 ~ 6035986 (+) True G133129
TU166918 lncRNA upstream 59986 5932822 ~ 6007588 (+) True G133115
TU166938 lncRNA upstream 68343 5998609 ~ 5999231 (+) True G133132
TU166908 lncRNA upstream 160588 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 164771 5901703 ~ 5902803 (+) True G133108
TU167040 lncRNA downstream 7467 6084852 ~ 6101019 (+) False AMCG00011873
TU167088 lncRNA downstream 146921 6224306 ~ 6224519 (+) True G133248
TU167106 lncRNA downstream 180675 6258060 ~ 6260368 (+) False AMCG00011876
TU167109 lncRNA downstream 245381 6322766 ~ 6347706 (+) True G133264
TU167234 lncRNA downstream 489474 6566859 ~ 6578010 (+) True G133350
AMCG00011865 mRNA upstream 13569 6053574 ~ 6054005 (+) True AMCG00011865
AMCG00011863 mRNA upstream 16721 6030099 ~ 6050853 (+) True AMCG00011863
AMCG00011861 mRNA upstream 45878 6018215 ~ 6021696 (+) True AMCG00011861
AMCG00011864 mRNA upstream 54464 6003677 ~ 6013110 (+) True AMCG00011864
AMCG00011862 mRNA upstream 71919 5987777 ~ 5995655 (+) True AMCG00011862
AMCG00011873 mRNA downstream 23445 6100830 ~ 6102011 (+) True AMCG00011873
AMCG00011872 mRNA downstream 70247 6147632 ~ 6148597 (+) True AMCG00011872
AMCG00011874 mRNA downstream 92684 6170069 ~ 6170866 (+) True AMCG00011874
AMCG00011875 mRNA downstream 164605 6241990 ~ 6243488 (+) True AMCG00011875
AMCG00011876 mRNA downstream 178937 6256322 ~ 6260389 (+) True AMCG00011876
TU166896 other upstream 179682 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 179682 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 238042 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 306326 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2124212 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 178565 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 406562 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 468003 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1159556 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1427697 7505082 ~ 7508751 (+) True G133667

Expression Profile