RNA id: TU167009


Basic Information

Item Value
RNA id TU167009
length 349
lncRNA type read_through
GC content 0.53
exon number 2
gene id G133181
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5992314 ~ 6035898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttaattgtgtattattcCAGTGAGCTGCAGTAcccctgctgtgctgtgagGGGCAcagtctcactctctctcactgcattattaatattaacactTCTGTCTGGGTGTCCGTCTAGCACTTGTGAAGAACGGAACCGCGGAACCCGGTCGCCATGGCAACcgtcgggggtggggggggcatgaTGTCACAGCTGCCGTTGCCATGCTGACGGAGAATCGGCTTATCCCTGTTTAAACAGAGAGGGGGTGAGATTGAAGTTAATCAGGGAGAATGGTAACGAAGGCCGACACTGATCtgtacagtgagagagagagagagagagaNggggggggggggggagagaga

Function

GO:

id name namespace
GO:0008190 eukaryotic initiation factor 4E binding molecular_function
GO:0031369 translation initiation factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167008 lncRNA downstream 1812 5989114 ~ 5990502 (-) True G133180
TU166974 lncRNA downstream 18934 5925629 ~ 5973380 (-) True G133156
TU166959 lncRNA downstream 95311 5896739 ~ 5897003 (-) True G133147
TU166884 lncRNA downstream 126427 5861124 ~ 5865887 (-) False AMCG00011842
TU166883 lncRNA downstream 131625 5860396 ~ 5860689 (-) False AMCG00011842
TU167010 lncRNA upstream 129 6036027 ~ 6038712 (-) True AMCG00011867
TU167039 lncRNA upstream 43948 6079846 ~ 6080079 (-) True G133209
TU167094 lncRNA upstream 189622 6225520 ~ 6227193 (-) True AMCG00011886
TU167115 lncRNA upstream 195260 6231158 ~ 6231847 (-) True AMCG00011882
TU167137 lncRNA upstream 235289 6271187 ~ 6330227 (-) False G133277
AMCG00011857 mRNA downstream 5353 5981093 ~ 5986961 (-) True AMCG00011857
AMCG00011860 mRNA downstream 34855 5954630 ~ 5957459 (-) False AMCG00011860
AMCG00011859 mRNA downstream 45394 5940650 ~ 5946920 (-) True AMCG00011859
AMCG00011856 mRNA downstream 53121 5936640 ~ 5939193 (-) True AMCG00011856
AMCG00011858 mRNA downstream 99234 5889044 ~ 5893080 (-) True AMCG00011858
AMCG00011867 mRNA upstream 21 6035919 ~ 6040630 (-) False AMCG00011867
AMCG00011871 mRNA upstream 18186 6054084 ~ 6057440 (-) True AMCG00011871
AMCG00011870 mRNA upstream 21595 6057493 ~ 6063479 (-) True AMCG00011870
AMCG00011869 mRNA upstream 32250 6068148 ~ 6077058 (-) True AMCG00011869
AMCG00011885 mRNA upstream 77676 6113574 ~ 6123209 (-) True AMCG00011885
TU166988 other downstream 34389 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 139724 5851880 ~ 5852590 (-) True G133075
TU166831 other downstream 231765 5741213 ~ 5760549 (-) False AMCG00011845
TU166829 other downstream 232027 5741213 ~ 5760287 (-) False AMCG00011845
TU167038 other upstream 42472 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 189622 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 216048 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 325493 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 342200 6378098 ~ 6461788 (-) False G133365

Expression Profile