RNA id: TU167088


Basic Information

Item Value
RNA id TU167088
length 214
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G133248
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6224306 ~ 6224519 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggAGAGGTAAGGTGAAAAGTGTGCCACTGAAACTCCCTGGGGAGGGGATTTGCAGCCTCTAGTGGAAGCTCATAGTACTGCACTCTAAACAAGTGTCAGACCATTCCTAGCTTCatctagttagagctcatctggataatgtgtacagttctggagaGGAatgggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167040 lncRNA upstream 123287 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 146921 6067574 ~ 6077385 (+) True G133145
TU166935 lncRNA upstream 188320 5992317 ~ 6035986 (+) True G133129
TU166918 lncRNA upstream 216718 5932822 ~ 6007588 (+) True G133115
TU166938 lncRNA upstream 225075 5998609 ~ 5999231 (+) True G133132
TU167106 lncRNA downstream 33541 6258060 ~ 6260368 (+) False AMCG00011876
TU167109 lncRNA downstream 98247 6322766 ~ 6347706 (+) True G133264
TU167234 lncRNA downstream 342340 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 364897 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 424191 6648710 ~ 6649165 (+) False AMCG00011917
AMCG00011874 mRNA upstream 53440 6170069 ~ 6170866 (+) True AMCG00011874
AMCG00011872 mRNA upstream 75709 6147632 ~ 6148597 (+) True AMCG00011872
AMCG00011873 mRNA upstream 122295 6100830 ~ 6102011 (+) True AMCG00011873
AMCG00011865 mRNA upstream 170301 6053574 ~ 6054005 (+) True AMCG00011865
AMCG00011863 mRNA upstream 173453 6030099 ~ 6050853 (+) True AMCG00011863
AMCG00011875 mRNA downstream 17471 6241990 ~ 6243488 (+) True AMCG00011875
AMCG00011876 mRNA downstream 31803 6256322 ~ 6260389 (+) True AMCG00011876
AMCG00011890 mRNA downstream 96483 6321002 ~ 6329996 (+) True AMCG00011890
AMCG00011891 mRNA downstream 107932 6332451 ~ 6347406 (+) True AMCG00011891
AMCG00011892 mRNA downstream 127075 6351594 ~ 6360880 (+) True AMCG00011892
TU166896 other upstream 336414 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 336414 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 394774 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 463058 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2280944 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 31431 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 259428 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 320869 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1012422 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1280563 7505082 ~ 7508751 (+) True G133667

Expression Profile