RNA id: TU167131


Basic Information

Item Value
RNA id TU167131
length 1114
lncRNA type sense_over
GC content 0.50
exon number 4
gene id G133277
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6271187 ~ 6347713 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTAGTGCCCCCCCAGGCCCTGTGTGCTATACAGCCCAGTCCTCTGTCACACAACTCTCTCCACAACTCCAGCTGCTCtgcaaaatactttattttatattttttttatactttttgtgATGCAGTACAGAGACAGCGGGGGGTGTCAGAGTGAGAGACGCAGCTCTCAGGAGACTGACACACCCAGCGCGTCACACAGCAGAGAGACAGTGTAAAGGCAGAGATAGTTAAAATCACAgatacagttttaaaagcatAAGATCTCACAGGAAATCATCGATCATTATTGCTGGTTATTGTGGGGAAACAGAAAACTAAATCACAATAATACACGTGTGATGTAGAATCACTGGCAGCGTCCGTTCGCTGCATTGGGCCGGTTGTTGGTGGTCTGGAAGTGGTCGGGCCGGCAGAGGTTGTCGATGTTGTCGCAGGCCAGCGTGATGAAGCTCTGGGTACGACTGACTCTAGTGACACTACACCTCCTGCGTATGTTGCTGCTCTGCACGCTGTACACTGTGAACATGTTAGCGCTCACACACAGGTTCCCCTGGTTGTTCTGCGAGAATCTCCTGCCTCCTGCCCTGCAAACGTTGTCGACGTTCGCCCGAGACCTTCATTGCCTCGTCTCGGGAGGACGTCAACAACGTTTGCaggggaggaggaaggagatACTCGGAGAACACCAATGAGAACCTGTGTGTGAGCACTAAGATGTTCCCAGTGTACACCGTACGGAGCAGCAACAGGCTCAATGTGTGTCTTGTCACCAGTGTCAATCATATCCAGAGCTACATCACACTGGGCTGCGACAACATTGACAACCACTGCCGGCCCGACCACTTGCAGAGCACCACCAACCAGCCCAACCCGGCGAACCCACCCTGCCAGTGATTCAGCAATAATGATCGATGATTTCCTGTGAGATCTTATGCTTttaaaactgtttcTGTGATTTTAACTATCTCTGCCTTTACACTGTCTCTCTGCTGTGTGACGCGCTGGGTGTGTCAGTCTCCTGAGAGCTGCGTCTCTCACTCTGACACCCCCCGCTGTCTCTGTCCTGCATCACagaaagtataaaatatataaaataaagtattttgcaGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167115 lncRNA downstream 74500 6231158 ~ 6231847 (-) True AMCG00011882
TU167094 lncRNA downstream 79154 6225520 ~ 6227193 (-) True AMCG00011886
TU167039 lncRNA downstream 226268 6079846 ~ 6080079 (-) True G133209
TU167010 lncRNA downstream 267635 6036027 ~ 6038712 (-) True AMCG00011867
TU167022 lncRNA downstream 289396 6015910 ~ 6016951 (-) True AMCG00011868
TU167150 lncRNA upstream 8752 6356465 ~ 6360880 (-) True G133286
TU167251 lncRNA upstream 26119 6373832 ~ 6374995 (-) False AMCG00011895
TU167304 lncRNA upstream 117557 6465270 ~ 6479835 (-) False AMCG00011913
TU167303 lncRNA upstream 130560 6478273 ~ 6479835 (-) False AMCG00011913
TU167315 lncRNA upstream 188910 6536623 ~ 6537760 (-) False AMCG00011913
AMCG00011878 mRNA downstream 33351 6271202 ~ 6272996 (-) True AMCG00011878
AMCG00011884 mRNA downstream 51507 6252815 ~ 6254840 (-) False AMCG00011884
AMCG00011880 mRNA downstream 67421 6236744 ~ 6238926 (-) True AMCG00011880
AMCG00011882 mRNA downstream 73234 6231704 ~ 6233113 (-) False AMCG00011882
AMCG00011886 mRNA downstream 79418 6225796 ~ 6226929 (-) False AMCG00011886
AMCG00011895 mRNA upstream 24787 6372500 ~ 6378472 (-) True AMCG00011895
AMCG00011900 mRNA upstream 39811 6387524 ~ 6393414 (-) True AMCG00011900
AMCG00011903 mRNA upstream 47299 6395012 ~ 6403156 (-) True AMCG00011903
AMCG00011904 mRNA upstream 83044 6430757 ~ 6435298 (-) True AMCG00011904
AMCG00011901 mRNA upstream 89987 6437700 ~ 6446839 (-) True AMCG00011901
TU167121 other downstream 51652 6251946 ~ 6254695 (-) True AMCG00011884
TU167095 other downstream 79154 6225520 ~ 6227193 (-) False AMCG00011886
TU167038 other downstream 226980 6078370 ~ 6079367 (-) True G133208
TU167012 other downstream 313329 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 348422 5955287 ~ 5957925 (-) True AMCG00011860
TU167158 other upstream 13678 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 30385 6378098 ~ 6461788 (-) False G133365
TU167270 other upstream 37943 6385656 ~ 6461788 (-) False G133365
TU167254 other upstream 47303 6395016 ~ 6397975 (-) False AMCG00011903
TU167255 other upstream 47303 6395016 ~ 6397975 (-) False AMCG00011903

Expression Profile