RNA id: TU167207


Basic Information

Item Value
RNA id TU167207
length 5214
RNA type TUCP
GC content 0.54
exon number 2
gene id G133327
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6483947 ~ 6489208 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAGCGAGTCAGTGGTGATGCTGATCGACGGCTTCTTGGCGGTGACAGCCGTGCTGGAGCCCCAGCGCCTCTTCCTGCCAGGCTGCCCCCCGGCACCCTCCGCATCTCCTCCCGCGGTGCCTCCTGCTGCTGGTGCCGGCCCAGAAACCGCAACACTGCGTGGAGCTGCAGCCGCACTGGGCTTACTAGCAGCtaagagacggagagagaggagtCAACAGAGGTACACAGTGACGAGATGAGTCACGGTAGGGAAGTGCATAGACACAGACCCAACCCACCTACAGACCCAAACAGTTGATACTTACAGACCAGGGAGATCCTGCGGGCAGTGAAAGCTTTGGGAGTGGCGCTCtgaaagaaaggagagaataaaacagacCCCAGCACAGGgggagaggtgagagagagagagagagagacagacagagaccgTGCAAAcggacagagagaaagaaaagagggggagagatagTTACAGCCATCAATAAACCAGtcatgggggggtggggagagggggCAGTGCAGAAACACAGCAGAGCTAGACACACCCTCCCTGCACAGCACGGACTCCTGAAACTCACTGATCGACTAGGTGACTCACGCACACTAACTGACCGGAAGACTTCGCATTTGCGGGGTCTGCGGGAGGCTGGTGCAATCTGCTCTGAGACCTGTGCCGAGCAGCGCCTCCCTGTGGACGGTCTGGGGCCACTAAGTGAGCGGGAGTGTAGGGTGTAAGTCTCTGGGGTGGAGTGTGTGCAGTGGGCATGTACAGTGTGTTATGCAGAATCTGCATGGTGCCCATATGAAGTGACAGGAGGTCAACAGACACTACCTGGCAGTGTCAGTACAGCAGTGTGTGCACATCGACAGGGAAAGCGCACTGACTGCATATGGATGCTGTACAGTGCACACCAGACAGGAGTGCAGTATCTTCTGCGAGGATGCAGGGGGGGATGTGCAGCGCATCAGTGTGTGGACTGTGCCCATTTGTGCCATGACTGCAGGGCTGGACTGTGTGCTGGGCTAAGCTGTAGGCTGGGCTGTGCGCCGGGCTGGACTGGATTGAGGGTGGGACTGGGCTGTGCCCTGAGGGCGGGTGCTCTAGCCCCACTGTGCGTCTGACTAACACAAGAAAACAGTTGAACAGATCAGTGGCTCATTACAGCTCTGTAGCGGTACTGCAGTTTAAATTCAAGATGGACAGGAAAAACATTACGATTGCACTTCCCACTAATTTAATCTGTTTATACTCCACAGGCCTCTACCTGAGGGCACTATGACTTAAAAGCAGAGACCACAGATCATatgtaataaacacatattGATTTTAGAAGGCTGCAGACAATTTATCTACCAATTAacttaattgtaattaaattaaaactgcagtatccatggaaaaattaaaaatcataaatctgttaaacattaaaacctTCTCTTGAGgttcaaaataaaagacaaaaaagtcTCTGTagacaaaaaaattaagaaaaatgtattaaaaaataaaaagttacgTATAGATCTAATATAGAAAGAGAAATGACAAGCTTTTCCTGGTACCATTGACACCTGATCCTCACTGGCTTGGCTATGGCCCAATCGCACGGCAGTGTACTGTATCTAGGCAACAAGGGTCCAAtcagaggaggtggaggaggagtgTGGGCGGGACTCTGTTTGAGAGTGTGAGGCTGATTGGCTGGCTGGCACCGCTCTGTGTGTTCTATTGAGGGGGGCTGTGGGACCTGCTCTTGTCAATTCCTGTCGCTCATGGTTTTGGTCTTTCgggttttaaaaatgtcctcTTCCTGCTTTCGGGCCTCTGTGCCCGGACAAGAGTGTCTCAGAGTCTGTGTGGGGGAGGGTAGTACAGAGGCGGAGAGGGAGGGGGCAATTCGAGGTAGTGTCCTGGTGCCCTCTTACCCTCCCCCTTCAAAAGTTCACTCTGCGCCGCAAAGCGAGAGAGCGGGAATCAGTCTTTCAAATCTCCTCTTGTACCACCCGTGTGGAAGAGTGTggaggaagaggggagagagaggagggtgcTAAGCTTTATCCATTTCTTccaggctctctctctctcctgctccctctcttccttttcttttccaatcTTTTCCATGCACAGCACTGCAGAAGGGAGAGCAGACCGGCACTGCAGAGGAAGTAGAGGACAGGCAGCAGCTGTTCTATTcacccttccccctctctcattCCATTCATTGTCCAGAACGTGACGCAAGCAGGGAGCGAGCGAAGTGTGGAAGAGCAGAGGTCTGTCCTTTCCCGTGCAGGGCGAAGGTGAAAAAGTCTGCCTGCTGTAACGGTCTGGAAGGGCTGAGTGGGAGGCACTCAGGGCCCGGTGGCGGGCGGCATCCGAGAGGCCAACAGGACGGAGGGAAGACTCCCAGGGTGCCCTGCTCCATCAACCCTGCACTCGCTGTGAAGCGGCAAAAGTCTGTGCTCCTGACCTCACAGGCAGGTCATGGtcagggaggagagaggagatgaGAGACATTGCCCAGACATTTTCAGGAGACGGGGAGGTGGAAGGGAGTGGCTGTTGGCCCCccattgttcttttctttaaaaacatttaagagtTGTTTCAGTGTCTTTTAAGGAAACTGGGTGGCATCCCCACAATCTTTTTGCTGTTCCTCGCACTCTTTGAATCCCAGGAACATGCTGGCAGTgtgagggaaagggagagggttGGCGTCTGCAGCAGCAAACTGAATCCCTGGCGACATCAGATTCATTGGAGTGGGGTCTGTTTTGAGATTAAAAAGTCTCTGAAGTGGAGATGTGTGAGAAAGTTACTCCAAAGCTGGGTCAGTGTGCCCCCTAGCACAAGTGCACACATGGGGTGTGTAGGAAGTCTTATCCCCCACTGTTGTAGACTCAGTCAGTGAGGGACTGTGGGGGCACGCGCTCAGTCTTGGGGTTGGCAGCCGTGACACGGCTCTGTGTCCTCCGAGGCACCGATGCAAGCTGGGAGGAGGCACCAGGGCAGAGCGATGGTCAGTCCATAAAGGAAaccacaggaagaaaaaaagaaaaaaaaaaaaagaaaaagaaaaaaggttgcatgtttattttgggggggggggggcatcatTGAAAACCAGCAGTCTTTCGTGAACTTTGACCTGGAGGATTGACTTTTTGTTGCTCAtgtcaaattatataaaaaacaagcaGGCAAACACAGCAGAGGAGAGCTCAGCTGGGGCTGGGGCCGCTGACCAATCAGGGAATCGTCGTGTCCTTGACCCCGCCCCCCTGGTCATTCCCCACCCCCTAGTGGTGGTTCTGGAATACTGTGGTGAACCAATCGGGTAAATTAAGTCTTTCTGATTGACAGGAACGTGAAGAAGCAGGGCGCGAGGCAGGTTTATAATCCAAACAGGAGGCAAGGATGTGCAAGTCAGACCATGGCAGTCCGGCACGCTCTGCTCTCGCAACCAGCAGGTGGTGCAAAAAACAGATCCAGTAATAGAGCACAGGGTCAGTCCACTGGAGCAGCTGGGTCTGAGGGCAACCCAGACTGCGGTGCTGGGGGGCTCCGTCTGTCTGTGCCCCCCACGCCCGTCTgtgaggtggtggtggtgggctGGGGGGGTTGGAAAAGCTGTGTGCTGTTCAGTCAGTTGACAGTCATAGAAAGTCCATCTTGGGGTTCTTGGGAGACAATCCAGGGAATCGGCGCAGAACCAAGCAACTGCACACCCCCCCTAGACAGAATCCAGAGTGAGGCTGTGGCATCGTTATCTCCAGTGCTGGTCTGGCTCACATCCAGTCACACGACTCTCGCCCACCCACCCTTCACATAAGCTGACGGTGAAGGGGGCGGGGCCGGGGCGGGACGGCGATACGGAGAGATAGGGAGGAGGGGTTTAACCAGGCTTCTAGAACACCGCCGTGGAAGGCTGGGGGCGACAGGCCACGCCCTCCATTATTCGGGACCCTCCCCCCTCAGTTCCATTCTCTCATTGAATCTCTCCGGGTTTCGGCGGTCTCCATGGCGACACAGCCTGAATAGCAGGGCTGTTCCGGCAGCCTccctcagcagcagcaggcaggcaggcaggcaggcagtcaGGTGAGTTGTAGGTGGGGACCGAGTCAGCGCAGACGGGCCTAGCTCAGGTAATGCCGGGGCACTTGGGTATAGCGGAACaggtgtagtagtagtagtagtacgcAGGTACCATTAGGGGCAATGGAAGAAGCATGAGCACCTTACAACAAAGCAATCAATGGGGTTTTAAACAGCAGATACCCGTCCCTCAGCACGGGCACAACTCTCACACAGGCAGGCATGTCTACATCAACACTCACTCACACCCTGTCCCTACCAACACTGAACACTGCTCATTACGCGTGTGTTTATCTGGGCTGTGCAGTCGTGTGTACAGGCATTGGTGCGAGTCAGAGAGAGCGAACGAGAGAGAAAGACTGGTGCAGTAGAAAGTACAGTCCTGTCAGTGCTATTAGTGTCAGAAGGGTAATAATTCTGGACAAATGTGATTTATAACTCTCTCCAGGGCAGCCTAGTCTACAGTCCAGTCTGTAGCATATTGACCCCATCAGCTATAGAGGCTCTGGTGATGGACTAAGTCAGGAAAAGCTCAGTCCAGTCAGGGTTTCTAACTGTCACTGAGTCAAAAGGAGTCCAGTTCTGAACTCTGACACCTAATGAAGCTCACAGGGCAGCCTGTAGTTCAGGACAGTCAATATACTGTCAGGAGGTTGCTGTATGAGAATCTGAGCTGTGTGGTGCcgtacagtatactgtagtgtaaTGCTGCGAGGTGTTGAGTGGGAAAGACATGACAGTGAGCTACAGCACTAAAACACTGACCTGCTCAGTTACAAAAACAAGCTCTGacctctcacacacaaacacacaggcccccagaccccccaccccacccaccctTAGCCCCAGACTCGGTCGCAGCTCCTTTTCTCCCATCTTACCTCCTCTGAGCGCCCCTCGCTATTCTCCGAGCCCTGGCCCTCGGGGTGGTCCGGGGGCTGACCCTCAGCGACCCCGGTGACCTCTGGGTCGGGGTGTCCCTCGGCCTCCATGCCCGAGCCGGCTCCCTCCGACACCGCGCCCTGCTTCACCTCCCTGAGAGAGCGAGTGAGCAAGAGAGGAGTTAATACAGTTGgacactgactgaatgactaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 136241 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 223579 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 259428 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 382928 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 406562 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 77651 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 100208 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 159502 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 187308 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 225150 6714358 ~ 6717923 (+) True G133440
AMCG00011897 mRNA upstream 5742 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011898 mRNA upstream 23238 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011899 mRNA upstream 58797 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011896 mRNA upstream 75417 6406462 ~ 6408530 (+) True AMCG00011896
AMCG00011905 mRNA upstream 79469 6402981 ~ 6404478 (+) True AMCG00011905
AMCG00011906 mRNA downstream 13601 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011908 mRNA downstream 37651 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011909 mRNA downstream 68979 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011910 mRNA downstream 72891 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011907 mRNA downstream 77959 6567167 ~ 6568025 (+) True AMCG00011907
TU167105 other upstream 227265 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 596055 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 596055 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 654415 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 722699 5759858 ~ 5761248 (+) True AMCG00011830
TU167225 other downstream 56180 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 747733 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1015874 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1075600 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 1076179 7565387 ~ 7566346 (+) False AMCG00011971

Expression Profile