RNA id: TU167262


Basic Information

Item Value
RNA id TU167262
length 1299
RNA type TUCP
GC content 0.45
exon number 2
gene id G133365
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6378098 ~ 6461788 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACAGAGTTACATCactgagtttttattttaagttcaggaaaaataaaaaggaaacaaacaaacagaacagttCTGCCATTCAatttgttattatcattaatattattaccactatgactattattattattactactattactattattattattaaatatgaatgtcatTCCATTGGATTGATCTGTTCAATCTATTCATCAATTGATTTATTCCAATCACAAATCAATGGGAAATAAGCACAGTAAACACCAGTAACAAGataaaaaagacaacattttattttgaatacttttcttcttaaaaaaagggaagattttggaaatatatattttaaagacacGAGCAGATCCCCCCAACACCCCCCgttccccccccaacacacaataGTTTGCAAACAGTAAACAAAGAATTTCATTCCCTTATGATGACCCCTAAGTGACCTGTCCAGCAGGCTCTGATTGGAcgactcacacagacactcaagaCACGCGGAGTGACGCGGACCGCCGGCATTATCATTACAACAATagtaacaacaacagcaatagtgacaataataataacaaatatcataataataacaataacaataatcctCATCGTCGTGGGAGGCCGGCTGCTAGCGCGGCGGGGGCGCGGAACCGGCCACTGGGGCAGGAGGGCAACAGTAACGTACGGCAAGTACATCGaaagacaacacaaaacacaggcaCATGGGGTGAAGTTAACTTTTAATACGGGTCTCTGGGGCGGGGgggttgagtgtgtgtgtaattttgtgCAGtacaggactggactggactttactgcactgtgctgtatgcTACCACACGGCACTGTATGTATCCTGTGCTACTGTATGGTACTGCGCTGTGCTGTTCCACACGGCCTGGTCTGCAGTCTTGTGCAGTttggagagacagacacagaatcCCTTTCTCGCTCGCACCCGGAGCTCCAACCCAATGACAAACACGAGACGACACACAAACGAACGAACGGACGaacaacaagaaacaagaaCCTGACACACAACCATAAACAACAGCAATTCAGCTGGAGTCGTCAAGCGGGGGAGGGAGAtcgacggggagagagagagagagagagagagagagagagggagagagggaggaggaggaaggggagagagggtACCAGAGGGTCGTTTACTTTTCCgagtgcttctctctctccctccctctcgctgGTGCCTGCCTGTGccgcgtgcgtgcgtgtgtgtgtgagtgagtatcTGATAGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167251 lncRNA downstream 27074 6373832 ~ 6374995 (-) False AMCG00011895
TU167150 lncRNA downstream 41189 6356465 ~ 6360880 (-) True G133286
TU167131 lncRNA downstream 54356 6306347 ~ 6347713 (-) True G133277
TU167137 lncRNA downstream 71842 6271187 ~ 6330227 (-) False G133277
TU167115 lncRNA downstream 170222 6231158 ~ 6231847 (-) True AMCG00011882
TU167304 lncRNA upstream 3482 6465270 ~ 6479835 (-) False AMCG00011913
TU167303 lncRNA upstream 16485 6478273 ~ 6479835 (-) False AMCG00011913
TU167315 lncRNA upstream 74835 6536623 ~ 6537760 (-) False AMCG00011913
TU167327 lncRNA upstream 81414 6543202 ~ 6545755 (-) False AMCG00011916
TU167344 lncRNA upstream 153414 6615202 ~ 6617207 (-) False AMCG00011920
AMCG00011900 mRNA downstream 8655 6387524 ~ 6393414 (-) True AMCG00011900
AMCG00011895 mRNA downstream 23597 6372500 ~ 6378472 (-) True AMCG00011895
AMCG00011894 mRNA downstream 79341 6316786 ~ 6322728 (-) True AMCG00011894
AMCG00011878 mRNA downstream 129073 6271202 ~ 6272996 (-) True AMCG00011878
AMCG00011884 mRNA downstream 147229 6252815 ~ 6254840 (-) False AMCG00011884
AMCG00011902 mRNA upstream 6301 6468089 ~ 6471733 (-) True AMCG00011902
AMCG00011913 mRNA upstream 17931 6479719 ~ 6501567 (-) False AMCG00011913
AMCG00011915 mRNA upstream 44191 6505979 ~ 6509786 (-) True AMCG00011915
AMCG00011912 mRNA upstream 71004 6532792 ~ 6535027 (-) True AMCG00011912
AMCG00011916 mRNA upstream 78173 6539961 ~ 6545158 (-) True AMCG00011916
TU167254 other downstream 4094 6395016 ~ 6397975 (-) False AMCG00011903
TU167255 other downstream 4094 6395016 ~ 6397975 (-) False AMCG00011903
TU167158 other downstream 38341 6361391 ~ 6363728 (-) True G133291
TU167121 other downstream 147374 6251946 ~ 6254695 (-) True AMCG00011884
TU167095 other downstream 174876 6225520 ~ 6227193 (-) False AMCG00011886
TU167311 other upstream 18298 6480086 ~ 6481834 (-) False AMCG00011913
TU167316 other upstream 18298 6480086 ~ 6491966 (-) True AMCG00011913
TU167319 other upstream 68909 6530697 ~ 6548895 (-) True G133393
TU167424 other upstream 201344 6663132 ~ 6740536 (-) True AMCG00011924
TU167457 other upstream 306505 6768293 ~ 6770294 (-) False AMCG00011928

Expression Profile