RNA id: TU167379


Basic Information

Item Value
RNA id TU167379
length 2505
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G133440
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6676516 ~ 6717923 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggGAGTGTGGTATTGTAGAGTACAATGTAGAACAGTGTAGTACAGAGcggctgtgtttgtgtgcaggatTGTGTGTACAATCACAGCAGGAGGTGcactgtgagtcagtgtgtcttGGCCCTCAGCAGGCTGTGCATATCTGCCATAGCCCAGCGCATACCTGCAGCACTGCACCTGTCATTCCCTGAAACCACACATGTTCACACCGGACCCCTCCTTCTATTCACtccagaaacacaaaacaaacaaacctctGCTGGCATGACTGTTGCCTCTCAACATAAGCATGTCGCTCTCCTCCGCCCCTcacctctctctgcaggagtcCCGTCCCCACCCCGATCACACAAAACACCACCCATTCACACCCGCCGCCGCCCTGgtttctctccccctttctaACACGCCCGGCCGGGTGCCGCTGATCCGGTGGAGCCGCATTCCGGTCCTGAGACAACgtctgagagacagagacacttgCTCAACAGGACAGGCctgttcccctctctctctgtgcagtgttaatgtgctgtagtgttcagtgtgtctgtattaaccctctctctctcagtgcagtgttaatgggGTGTCAACAGAGCAGGTGGAACtccagacagagggagagaaagaacaGAAACATCTACTGTTGACACAGACCCTGTCAGTCATATATACATGcagagagacacgcacacaaCACGCCAGCACAGCCCCCACTCTGTAGAATGTAGAAGAACACAGCACTGTACACTAAGGGGCACCAATAGAGAGCACAAGCAAGCAGCACCACACTAGTGCACTTGTCCCAATTCAATACTGCAGGCCAGCAGTAGTGTTAGTAGTGCAGAAAACTCTCACTAAAGAAGAGGACAGAGGCACAGCAGTGTGTCAGGAGAGTTTATTTATACTGTTCCCACTGTCAGGAGcacacagctgagagagagagagacagagacagacacagagacaaagacggagagacagaaaaactgCAGATTGCACAGGCAGTCTCCTCTCTCTGTTTAATACATACAGCACGCCCCCACTCCCACCCCCCGCCCCTCCCAAACACCATCCCCTTGGCACCACTGTACACCCACTAGACCCCCCACCGCTTTAGACAAACCGCCCTCCCCATTTGTGCCTACCGACCTTATTTACAGATGCCTATtacgcacaatccctcccaccccaaacacacacactcactcattcattcattcattccccCAAAAATATCTGGACACCCCCCAGGCCAGAAGAGAAGTCCAGGTCCTTCGTTAATCAATCACagtcaattaaccaattaaattaatttgaactgAGAAAGTTCAGGCCCTGGAAAACAACTTAACTGCCTGGGTCTGTCTTTTAAGTAGGTTCCAGACTGATGAGTGAGAGGGAGCGGACAGATACCAACTCTTCTCTCTCAATTAGAggacaccccctcccccccgaaGAGACGGCAGCTCAGTGACCCAGCGCTGCACACAATTCATTTATTCGTTTTGTGAAGGCATTCACTAATTACATCAATTCATTgaagcaattaaacaattaggATTACACTTTCACGCAATTATTACAGATATGACCAGGGAGCTTACGTCATTCATTAATacacctgccccccccaccactctctctctccatacgGTGCAGAGTGAGGTCAGTCAGTCATTAAAGTCCAGAGAAATGCCCaggtttccacacacacacacacacacacagagggggaCACAACTGTGACACTGTGCGCTATAGTCAGACAGGAGGTTTGTTGGTCAGTcattgtgtgtcagtcagtttaCAGGAtgttgtgtggggggggggtgaggggcGGTAACAGAAGCCATTGATTCcagaacaaaaatagaaagaaaaaaacaactgaaaaacaaaggaaGAGTCATGTGACCTCTGGCCACTCGGGGGCTCCAGGACACTCATGATTCGCCCAGCGCGgccataataaaataaaatggaaaataataatataataacaataataatggacTCCGCGCGTCTCCAGTCCCGGCAGGTCAATCCTCGGAGCTCGAGGAAGTGTCCGAGTGTTTGGACAGCATGGGATCCTCCATCAGGCCCGCGTCCTGGTCCGAGCCGTCGTAGCTCTGCGATAGGCTGTCGCCGCCGCCGATCTCCAGGGTCCCACACTCCCCCAGCTCCGCCTCCATCTTCACGTCGTAGCCGCCCTGCAGGAAGTTGGGCGGGAAGTGAGGGGAAGTGATGTCGGAGAAGGAGGAGTGACCCTCCTCttcgtcctcctcctcttcctcctcctccagctccagctccagttCCATCtctggctgttgttgttgttgttgttgctgctccAGGGCCAGGGGTGGGACAGGGTGCGTGGAGCCCAGGAGGGGGTCACCCAGCTGGGCTTGCAGGTGGAGCGAGGCCAGGGACTGGGTGGGGCGGGGCCGGCGGGGCGGCTTCTTAATGTCCTGCGTCAGGATCCGGTCGAACATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167247 lncRNA upstream 65193 6648710 ~ 6649165 (+) False AMCG00011917
TU167240 lncRNA upstream 124700 6589416 ~ 6589658 (+) True G133354
TU167234 lncRNA upstream 136348 6566859 ~ 6578010 (+) True G133350
TU167109 lncRNA upstream 366652 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 453990 6258060 ~ 6260368 (+) False AMCG00011876
TU167409 lncRNA downstream 16309 6734232 ~ 6734963 (+) True G133465
TU167439 lncRNA downstream 31736 6749659 ~ 6750920 (+) True G133491
TU167465 lncRNA downstream 62861 6780784 ~ 6781572 (+) True G133508
TU167498 lncRNA downstream 138258 6856181 ~ 6856773 (+) True G133534
TU167504 lncRNA downstream 145397 6863320 ~ 6886983 (+) True G133536
AMCG00011932 mRNA upstream 7983 6701913 ~ 6706375 (+) True AMCG00011932
AMCG00011917 mRNA upstream 60627 6644876 ~ 6653731 (+) True AMCG00011917
AMCG00011922 mRNA upstream 74025 6639722 ~ 6640333 (+) True AMCG00011922
AMCG00011907 mRNA upstream 146333 6567167 ~ 6568025 (+) True AMCG00011907
AMCG00011910 mRNA upstream 150543 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011923 mRNA downstream 57782 6775705 ~ 6780766 (+) True AMCG00011923
AMCG00011938 mRNA downstream 103750 6821673 ~ 6823491 (+) True AMCG00011938
AMCG00011933 mRNA downstream 141951 6859874 ~ 6862669 (+) True AMCG00011933
AMCG00011939 mRNA downstream 160052 6877975 ~ 6890954 (+) True AMCG00011939
AMCG00011954 mRNA downstream 375177 7093100 ~ 7094128 (+) True AMCG00011954
TU167225 other upstream 155873 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 225150 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 457676 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 826466 5887005 ~ 5887892 (+) False AMCG00011837
TU167596 other downstream 519018 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 787159 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 846885 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 847464 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 1242775 7960698 ~ 7970918 (+) False AMCG00011986

Expression Profile