RNA id: TU167493


Basic Information

Item Value
RNA id TU167493
length 240
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G133529
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6827982 ~ 6828221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttgttagttcttgtctgtgattggctgacaatgacagatctacgcgactccgccaatgggatcggtgcaattctgcagatctgcccAGATCTGTGGCgctacaagaacacgaccaaTGGTTTCCTCTCAGAGAATTTCTgtgtggaaatactttgacgaagtaaattaaaacactgtgaagtgtataatatgtgcagtgcaattcatATACCAcacatctacagctggtatgttaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167425 lncRNA downstream 135853 6690008 ~ 6692129 (-) True G133480
TU167347 lncRNA downstream 189390 6638247 ~ 6638592 (-) True G133417
TU167344 lncRNA downstream 210775 6615202 ~ 6617207 (-) False AMCG00011920
TU167345 lncRNA downstream 210775 6615202 ~ 6617207 (-) True AMCG00011920
TU167327 lncRNA downstream 282227 6543202 ~ 6545755 (-) False AMCG00011916
TU167518 lncRNA upstream 28000 6856221 ~ 6856699 (-) True G133547
TU167529 lncRNA upstream 64524 6892745 ~ 6892973 (-) False AMCG00011941
TU167543 lncRNA upstream 142072 6970293 ~ 6970708 (-) True G133571
TU167564 lncRNA upstream 238192 7066413 ~ 7066672 (-) True G133591
TU167584 lncRNA upstream 307647 7135868 ~ 7137524 (-) True G133607
AMCG00011937 mRNA downstream 27113 6797407 ~ 6800869 (-) True AMCG00011937
AMCG00011936 mRNA downstream 44406 6782239 ~ 6783576 (-) True AMCG00011936
AMCG00011931 mRNA downstream 53400 6772500 ~ 6774582 (-) True AMCG00011931
AMCG00011928 mRNA downstream 57718 6760407 ~ 6770264 (-) True AMCG00011928
AMCG00011927 mRNA downstream 67842 6750121 ~ 6760140 (-) True AMCG00011927
AMCG00011935 mRNA upstream 16478 6844699 ~ 6847986 (-) True AMCG00011935
AMCG00011934 mRNA upstream 38396 6866617 ~ 6871500 (-) True AMCG00011934
AMCG00011941 mRNA upstream 64438 6892659 ~ 6897827 (-) True AMCG00011941
AMCG00011942 mRNA upstream 91701 6919922 ~ 6920853 (-) True AMCG00011942
AMCG00011940 mRNA upstream 119534 6947755 ~ 6948753 (-) True AMCG00011940
TU167490 other downstream 3394 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 57688 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 87446 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 279087 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 336016 6480086 ~ 6491966 (-) True AMCG00011913
TU167597 other upstream 396486 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 396486 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 664649 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 681528 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 681528 7509749 ~ 7549652 (-) False G133712

Expression Profile