RNA id: TU167584


Basic Information

Item Value
RNA id TU167584
length 1636
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G133607
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7135868 ~ 7137524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagaatttcacaaaatcatttttattgaagatggtcagatttaaaaaatacacatacagacaattacTTCACGTGAACTACAACATGCATAGAGGCAGAATGAAGTGAGTTCCCTCTCCGGTCAGGAGAGCGAGGCAGCGGGAGGAGAGGCCTGcaacagaggaagagagaccATTAAACGGGGGATCTTTTCACAGCCATTCTGTGGGGGTAGATTAGTCTAGTCACCAGCTCAGAGCATGTGCATAATCACAGAACAATCAGGTGAAACACGGACATGCAACTCATCATAGCTGGAACAGACAAGGTCCAGGGCTGGGGAGTCACAGTCCACACTACTCCAGGGACCAGGACCCTgatcattcaaaacatttaatccaTCTCACCATAcatacctgagagagagaggggctcaTTCCTGCAGACTCAATGTCCCTGTAGGAGGAGAGGGGAAGCAGAAAAACATGTTAGCCTTGaagggaaaaaaggagaaacattCAGTAGTGATCGGCCATTGTCGGCATAGGGTGCATGCAAAATATCTGCTGCAATAGCGCCCTCCCAGCGGCCGGGCCCGGTCAGTGCAGTGGGTGTAATCATGAATTCAGCTGAAACACGGACTCACTTGCAGATCATCATTTCAGGCCCATGCCGCTGCATTAAAAAGCACTGGAGGTGGAATTTATAATCAGCCATAAAGCAGTTTTAAATCCCAAACGCGTATTGTATTGTGCGCACGATGCACTACCAAGCCGAGACAACGGGCGCGTCCAGCAGGGGTCGCTGTCCCCAAACACGTGGTCGGTGCGGGCAGACATGTGGGACTCATCCCAGTTAACAGAGCAGATCCACAGCCTAGCCTGCGATATTCCCAAGAAATTACAGCCTCTCCCACAACATCTGCGCTACAGACAGCCCCCATAAATCACATCTGCGAACAATTATCCACCTGTTACTGTACAGACAGCGGGAACAGAGACAGCCGCTTATTATAAAGGATATTCTAACGGGCCAGGCCTGTGCATTTCTCTGCAGGGTTGCACTTTTAGAGGTCCCCACCACGCTTTGATCAATGCCCTGTACCTTTTAGTGCCCCCTCACCATGAAAAGTACTAACATCTTACCTGGTTCATTGCGTGCGGCTTCCCGGCTCCGTGTTACTTACACCAGCCCTGCAATACTGTACAAATCCCCACCATCTATAAACCCCCTCTAATCATAATTAACCGACATAATTCGCTATTATGACGCATGGCGTTACAACGTGGAGAACAATAGGCTCTTCCGCATTGTGTAAACTACGCAAGCTCCCGCTAGACGCAGTGCTGATGAAACTTCTccagtatatacatttataactgaatcacttcaaaacaaaatgaacaagacTTGCTCCCAGTTTGATCACATTAAAAGCAGCGTGGGAACCTCAGGACTCACACTCCCGCTTCAACCCCAGCCCTGTTTAACCACGGCACGGTCTCGCCTAAAAATAAACCCACCCATAAACAAGAGCGTCAATCTAATACATATCTTACATCCTAGGCACGGCATAATGCTTAATGAGAGTGCATGTATAACCGCTACACTGCCTGCCCGTTCCTCTCCCAGGCTCAACAGACTGGCGCAGTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167564 lncRNA downstream 69196 7066413 ~ 7066672 (-) True G133591
TU167543 lncRNA downstream 165160 6970293 ~ 6970708 (-) True G133571
TU167529 lncRNA downstream 242895 6892745 ~ 6892973 (-) False AMCG00011941
TU167518 lncRNA downstream 279169 6856221 ~ 6856699 (-) True G133547
TU167493 lncRNA downstream 307647 6827982 ~ 6828221 (-) True G133529
TU167600 lncRNA upstream 87183 7224707 ~ 7240360 (-) False AMCG00011957
TU167710 lncRNA upstream 349145 7486669 ~ 7549652 (-) False G133712
TU167723 lncRNA upstream 355346 7492870 ~ 7500924 (-) False G133713
TU167725 lncRNA upstream 413771 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA upstream 413771 7551295 ~ 7575147 (-) True G133714
AMCG00011952 mRNA downstream 661 7131863 ~ 7135207 (-) True AMCG00011952
AMCG00011950 mRNA downstream 13855 7112506 ~ 7122013 (-) True AMCG00011950
AMCG00011951 mRNA downstream 58396 7076740 ~ 7077472 (-) True AMCG00011951
AMCG00011953 mRNA downstream 78352 7054361 ~ 7057516 (-) True AMCG00011953
AMCG00011944 mRNA downstream 116052 7018902 ~ 7019816 (-) True AMCG00011944
AMCG00011949 mRNA upstream 6623 7144147 ~ 7153383 (-) True AMCG00011949
AMCG00011956 mRNA upstream 46145 7183669 ~ 7184139 (-) True AMCG00011956
AMCG00011957 mRNA upstream 76713 7214237 ~ 7232435 (-) False AMCG00011957
AMCG00011965 mRNA upstream 259993 7397517 ~ 7398476 (-) True AMCG00011965
AMCG00011966 mRNA upstream 269719 7407243 ~ 7409540 (-) True AMCG00011966
TU167490 other downstream 311280 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 365574 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 395332 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 586973 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 643902 6480086 ~ 6491966 (-) True AMCG00011913
TU167597 other upstream 87183 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 87183 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 355346 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 372225 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 372225 7509749 ~ 7549652 (-) False G133712

Expression Profile