RNA id: TU167596



Basic Information


Item Value
RNA id TU167596
length 420
RNA type TUCP
GC content 0.50
exon number 5
gene id G133619
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7236941 ~ 7242300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAGATGCAGCGCATAAAGAGTGCCAGGGATACCCTGCTGCTCCTGTTGAAGAGCCTCCCTCTGGGCTGCTACTTCAATATTTATGGCTTTGGGTCGACTTTTGAGTCCTTCTTCCCTGACAGTGTGGAATACACCCAGGAGACTATGGACTCGGCTGTGGAGAAGGTGAAAACTATGGAGGCTGACCTNNNNNNNNNNGAGATTCTGGAGCCCCTGAAGGAGATCTACAGGAAGCCCTGCCGAGATGGACACCCCCGTCAGctaTTTGTGTTTACAGATGGAGAAGTGGGAAACACCAAAGAGGTGACAGACCTGGTGAAGATTAATGCCCTCTCTCACAGGTGCTTTACCTTTGGCATCGGGGAGGGGGCCTCCAGTTCTCTGATCAAAGGAATGGCCAGAGAGGGATCAGGANNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167594 lncRNA upstream 22479 7214235 ~ 7214462 (+) True G133617
TU167581 lncRNA upstream 99376 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 99376 7135868 ~ 7137565 (+) True AMCG00011948
TU167555 lncRNA upstream 118091 7118297 ~ 7118850 (+) True G133583
TU167556 lncRNA upstream 118313 7118297 ~ 7118628 (+) False G133583
TU167622 lncRNA downstream 112070 7354370 ~ 7354965 (+) True G133642
TU167653 lncRNA downstream 262782 7505082 ~ 7506119 (+) False G133667
TU167661 lncRNA downstream 267449 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 302983 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA downstream 304344 7546644 ~ 7547755 (+) True G133682
AMCG00011955 mRNA upstream 60779 7171481 ~ 7176162 (+) True AMCG00011955
AMCG00011948 mRNA upstream 96809 7136371 ~ 7140132 (+) False AMCG00011948
AMCG00011946 mRNA upstream 107460 7122970 ~ 7129481 (+) True AMCG00011946
AMCG00011947 mRNA upstream 126185 7103316 ~ 7110756 (+) True AMCG00011947
AMCG00011954 mRNA upstream 142813 7093100 ~ 7094128 (+) True AMCG00011954
AMCG00011959 mRNA downstream 46747 7289047 ~ 7346943 (+) True AMCG00011959
AMCG00011958 mRNA downstream 104650 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011963 mRNA downstream 128884 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011962 mRNA downstream 140675 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011961 mRNA downstream 199088 7441388 ~ 7451671 (+) True AMCG00011961
TU167225 other upstream 678456 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 747733 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 980259 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 1349049 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 1349049 5887005 ~ 5887892 (+) False AMCG00011837
TU167656 other downstream 262782 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 322508 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 323087 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 718398 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 785763 8028063 ~ 8032609 (+) False AMCG00011993

Expression Profile