RNA id: TU167622



Basic Information


Item Value
RNA id TU167622
length 596
lncRNA type intronic
GC content 0.46
exon number 1
gene id G133642
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7354370 ~ 7354965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaaactctttgaagtggattAGAGCCGAAAcccagacacagagctacgaacccgggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaaaaattCAACAACCAATCaactattgatctgacaggcatataaagaacagcgcacagtttctttctctctctctctcacctgaaccagtaactcgctgccacagctcaacctgtagctctgttgcccgaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacgaagaattcttttaaaggactttattaaataaagaactttacagactgcgctgcccacctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgaataCGAAAGTGTCTGTCAgttaaatagctatttgagtcttaagaaactcgacccttggaaccaaacagggccctgctttcctcaaagacttcaAATAAGTACGGTGAGAGaccctgcttgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167594 lncRNA upstream 139908 7214235 ~ 7214462 (+) True G133617
TU167581 lncRNA upstream 216805 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 216805 7135868 ~ 7137565 (+) True AMCG00011948
TU167555 lncRNA upstream 235520 7118297 ~ 7118850 (+) True G133583
TU167556 lncRNA upstream 235742 7118297 ~ 7118628 (+) False G133583
TU167653 lncRNA downstream 150117 7505082 ~ 7506119 (+) False G133667
TU167661 lncRNA downstream 154784 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 190318 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA downstream 191679 7546644 ~ 7547755 (+) True G133682
TU167649 lncRNA downstream 196330 7551295 ~ 7575165 (+) True G133665
AMCG00011959 mRNA upstream 7427 7289047 ~ 7346943 (+) True AMCG00011959
AMCG00011955 mRNA upstream 178208 7171481 ~ 7176162 (+) True AMCG00011955
AMCG00011948 mRNA upstream 214238 7136371 ~ 7140132 (+) False AMCG00011948
AMCG00011946 mRNA upstream 224889 7122970 ~ 7129481 (+) True AMCG00011946
AMCG00011947 mRNA upstream 243614 7103316 ~ 7110756 (+) True AMCG00011947
AMCG00011963 mRNA downstream 16219 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011962 mRNA downstream 28010 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011961 mRNA downstream 86423 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011960 mRNA downstream 116750 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011971 mRNA downstream 204698 7559663 ~ 7575192 (+) True AMCG00011971
TU167596 other upstream 112070 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 795885 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 865162 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1097688 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 1466478 5887005 ~ 5887892 (+) False AMCG00011837
TU167656 other downstream 150117 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 209843 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 210422 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 605733 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 673098 8028063 ~ 8032609 (+) False AMCG00011993

Expression Profile