RNA id: TU167649


Basic Information

Item Value
RNA id TU167649
length 1752
lncRNA type sense_over
GC content 0.38
exon number 3
gene id G133665
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7551295 ~ 7575165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAAGAGGCAGGGGCACTACTGTGTGTAGGGGAAACATTTGTAGGTTTTCTCACAGAGAGCGTGGCATCTTGTTTTTATGTCTCTTCAGATGTATATGAGTTCACCTTATGCCTCATGACACCAAAGGGCTCtatgcgttttttttttcctctcttctgGTCTTTTCATTTCTCGCAATGACtatttaattttccaaattCGTCAGTACCGATTTAAGTAGTGATTTTGAATTGAATctagaaatatataatacaaatagacaAAGTACTCTTACTAttactagtagtaataataatacacataataggacatttttcaaacactttcaAGGTAAaattgcatacatacatatatacatgtgcaTACATAAGAAAACTAAGCTAAACTAAACTAAGGAGTTTTGCTGAAATAAAAGCTTCATACTAAGTAACTGACACACCATGAATGAATGCAATGCTGATTTACACAGCAAATGACTAACATGTACAAAAGATAAGGATGATTTCAGATGAAGACTCAAACTGAACTCTGAATGGATGGGAGCAGAAACAAAGAACAGAGTATCTGCTGCCCCTCTGTTAAATGCTGTCCCTAACCTCAATGCTTTTACAAACTGGGGGAAACACAGTTCTTTGTACTCAAGTCAACCAAGACAGTGCTCCAAAACCAAGGCTGATGCCGTACAATAGAAAAGAAAGATAGATCATGGATTAAGTCCCCTAGCGGGAAAAGGCACAGGAATGTGCACTTTGTACAGATGAAGGACTTCACTGTCATCACAATTTTGCTGTTTGAGGCCTGCTAAACAGGAAGCATGTACTATTTCCTACCACCTAGATGTCTATCTTATTCAAAAAGCCTTCAATTtgcttcagttattttctgctGATTTGCAGTCACAGCTGCCAGTCGTTCCCTCCAGTTCAGCCATTTATCATAACATAGAAATCATCAGTCGTCAATGGCAAGAGCTGTGGTTCTGTAGCTTCTGTGGTCTCCTTGATTGTGGGGGaagtttttacataaaataagtgaGAGCTTCAGTTTTGCACAAAGTGAATATTTAGGAGTcccatttcaaagcaaaaaacacTGCAGCTAAGTTTGCAcaggttacacacacacacacacacattgtgcagATCTATACAATCACgattctttgcattttttttctttcgtttGTTTATTCCTCCCATTTCGCAACATTGTCTGTCCACCCACCCCTTTCCTAAACAAATGCACTAAATGTTTGTAAAAGCATGAATCATGTCTGTAACCATATAATTTGTGTtaggagagaggaaggaagtCAGGAAGAATATGAGTTGAATGCTTTTATGTTTCTGtacaatttgtaaaatgttcttaGCGTGCACTAAACCAAGAGCTCTATACTCCACTGTGGTTTGGTGATCATCGTTTCAGCCTTGTGATGACCATAGTAGTGGCCTAATTGTTTTATCATAATCTGAATCGGAGTGTCTAAGGACTTCTTACAAGGGCAACACTTAAGTTTTATTgATGAGTAATATTAGTTCACTGACAGATTTTGGACTGGGTGTAATTGTTGGCAGGTCAGTGTATGGGAGAATGGGGGCGGACACTTTCTCACAGGCTGTGTCTGTCCACAAATGAATGGAACATTTTGTTGCAAGGTTGCATACACATGGAATTGTTCTGTGCCCTTACACTGTATTTCAGCTTCATTAAAGTTGGTGGAAACtctgaagtttgtttttcttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167675 lncRNA upstream 3540 7546644 ~ 7547755 (+) True G133682
TU167661 lncRNA upstream 32001 7509749 ~ 7519294 (+) True G133669
TU167653 lncRNA upstream 45176 7505082 ~ 7506119 (+) False G133667
TU167622 lncRNA upstream 196330 7354370 ~ 7354965 (+) True G133642
TU167594 lncRNA upstream 336833 7214235 ~ 7214462 (+) True G133617
TU167816 lncRNA downstream 255399 7830564 ~ 7843471 (+) True G133783
TU167857 lncRNA downstream 349971 7925136 ~ 7926226 (+) False AMCG00011987
TU167871 lncRNA downstream 427615 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 487428 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 504590 8079755 ~ 8100437 (+) True G133832
AMCG00011960 mRNA upstream 69665 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011961 mRNA upstream 99624 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011962 mRNA upstream 167325 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011963 mRNA upstream 177760 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011958 mRNA upstream 190231 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011968 mRNA downstream 2191 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011972 mRNA downstream 24343 7599508 ~ 7683253 (+) True AMCG00011972
AMCG00011977 mRNA downstream 119848 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011976 mRNA downstream 204061 7779226 ~ 7782991 (+) True AMCG00011976
AMCG00011975 mRNA downstream 210685 7785850 ~ 7788725 (+) True AMCG00011975
TU167656 other upstream 42544 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 308995 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 992810 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 1062087 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1294613 6255950 ~ 6256682 (+) False AMCG00011876
TU167842 other downstream 385533 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 452898 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 476959 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 807948 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 942849 8518014 ~ 8519026 (+) False AMCG00012008

Expression Profile