RNA id: TU167656


Basic Information

Item Value
RNA id TU167656
length 1369
RNA type TUCP
GC content 0.59
exon number 10
gene id G133667
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7505082 ~ 7508751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTCCCCTCAGCTACCCTTCCCAGTGGGGCGGCGTCATCGACGGGAAACCTTGCACCTCAGGTCTAGAGGTGTTCAGGAAAGCCGTCCTGGATGACCTCTGGGAGGCGCTGTTGGAGCAGTTTGTGCAGGAAGACGAGGGCTCAGAGGCGGGCTCAGAGGTCACCGAGCAGGAAGTATACCAGGAAGCCCAGCAGCGGAAGTGTCAGGGGCTGAGGAAGCTGGTCGCCACTGCTGCCGGCAAAATCCGAGAGTCTGGGAAGGGAGGGCCGGTGCTTGTCCATGGCGGTCCCGGGGAGGGGAAGACAGTTTTTATGGCCGCGCTGGCTAATGAGCTCAAGTGCCCGTCAGGGAACTGCTGGCGGATTTTCACACCCAGCTGGATGCACTCTGCGTTGCCCGGAAAAAACAGCTGCTGGCCATTCTGGTCGATGGGGCGGACTGCCTGCAGGATGCCCAGGGCCAGTCGGTCTCTGACTGGATCCCACAGCACCTCCCTCAGGTCTGAGAGAGCAAGACCTGTACTCCCTACTGTGCATGTGCAAAACACTGGCCACCAGAAGTGGGGAGGAGCCTGCCTGGCAGGAAGTGATGCGTGCAGCGAGGCAACCCGAGAGCCGCATCCCATTGGCAACCTTTTCAGAGCTGGCCCGGACTATGCAGAGCATGATTGGCCAGTCTGACATCCAAGACCCGGACTCCCGTTTCCTTCTGGCCAATGACGATGTAAGATCAGCTTTTGAGGAGCAGTTTCTGATAAGCCAGGAAGCAGGGAGAAGGACCCACCTTCTGCTGGCAGCTCACCTCTGGACACTGGCTGACCCAGGTGGCAGAGACCGCTTCCTGCACTGCGAGGCCGCAGCCCTCCGTCACCTGCCGTTCCACCTGCCCATCAGAACTAActctgctaaaaataaatgaataaGTGAAGGGGGGCCAGCCAGCTGTCCTGCACTCCCTGCTGTCCAGTTTCCATTTCCTGCATGCCCATGTCCGGCTTGGCCTCCTCACCCATCTGCTGGACACCTGTCTGATTCCTCAATGGAGTTGGAAGATGGGGTGACCCATGGTGAGCTGGAGGCGTGCCATGATTTTCTGCGTCGCCACGCCCCCATCCTCTCCTATTGGCCGGCACTCTTTGTCCAGCAAGCTCTCAATGAACCTGAGGGCTGCGCCGCCCAAGTCTGGGCCCAAGGGATTGTGGGAAGGGAGACGGGCTCTGTGCGCTTGCTGAGGTGGCTGAACAAGCCACACGAAATCCAAAAGAAGGCCACGTAAGGATCAATTGACACAGTCACCACTTTTCACTCTGTGCCAACCTGTGTGAGCGTGCAGCCGAAGGGCAGACTGGCAGTTGTGGGAACTGNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167622 lncRNA upstream 150117 7354370 ~ 7354965 (+) True G133642
TU167594 lncRNA upstream 290620 7214235 ~ 7214462 (+) True G133617
TU167581 lncRNA upstream 367517 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 367517 7135868 ~ 7137565 (+) True AMCG00011948
TU167555 lncRNA upstream 386232 7118297 ~ 7118850 (+) True G133583
TU167661 lncRNA downstream 998 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 36532 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA downstream 37893 7546644 ~ 7547755 (+) True G133682
TU167649 lncRNA downstream 42544 7551295 ~ 7575165 (+) True G133665
TU167816 lncRNA downstream 321813 7830564 ~ 7843471 (+) True G133783
AMCG00011960 mRNA upstream 23452 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011961 mRNA upstream 53411 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011962 mRNA upstream 121112 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011963 mRNA upstream 131547 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011958 mRNA upstream 144018 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011971 mRNA downstream 50912 7559663 ~ 7575192 (+) True AMCG00011971
AMCG00011968 mRNA downstream 68605 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011972 mRNA downstream 90757 7599508 ~ 7683253 (+) True AMCG00011972
AMCG00011977 mRNA downstream 186262 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011976 mRNA downstream 270475 7779226 ~ 7782991 (+) True AMCG00011976
TU167596 other upstream 262782 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 946597 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 1015874 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1248400 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 1617190 5887005 ~ 5887892 (+) False AMCG00011837
TU167659 other downstream 56057 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 56636 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 451947 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 519312 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 543373 8052124 ~ 8055021 (+) True G133822

Expression Profile