RNA id: TU167675



Basic Information


Item Value
RNA id TU167675
length 455
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id G133682
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7546644 ~ 7547755 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCcctattagtagtagttgtccTGATATGATTTTCTGTCCAAGAATTCCCTCTGCAGCCAAGGCCAGATCAAGTTGTTGACCTTGCCATTGTTTGGAGTGGTTGACggttgtctttgtttgtttgttgacgTCAGGGTGAGTATGTGCTGGCGGGCTCGGGCAGCGGGGAGCTTGCAGTGTGGCAGTGGGAATCGGGAGTGGAAGTCACCCGGATCCCAGCTCACTCAGCCAGGATTCACCACTGCACCGCCTACTGGCACTCTGGTGCTAAAGGTGAGATCCAGAGCCAGTACACCAAGCCCAAGGATCTTGCTGTTGCCACAGCATCTGACGATGGGACGGTGCAGCTGTGGCTCCCCCTGCAGGTGGAGAACCGTGGCTCACTGTCGGACCACCGCGGAGTGATACGCGGCTCAGCTCCCGAGGAAGAAGTACCGGCGTTCCTCACGGNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167661 lncRNA upstream 27350 7509749 ~ 7519294 (+) True G133669
TU167653 lncRNA upstream 40525 7505082 ~ 7506119 (+) False G133667
TU167622 lncRNA upstream 191679 7354370 ~ 7354965 (+) True G133642
TU167594 lncRNA upstream 332182 7214235 ~ 7214462 (+) True G133617
TU167582 lncRNA upstream 409079 7135868 ~ 7137565 (+) True AMCG00011948
TU167649 lncRNA downstream 3540 7551295 ~ 7575165 (+) True G133665
TU167816 lncRNA downstream 282809 7830564 ~ 7843471 (+) True G133783
TU167857 lncRNA downstream 377381 7925136 ~ 7926226 (+) False AMCG00011987
TU167871 lncRNA downstream 455025 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 514838 8062593 ~ 8117249 (+) True G133825
AMCG00011960 mRNA upstream 65014 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011961 mRNA upstream 94973 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011962 mRNA upstream 162674 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011963 mRNA upstream 173109 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011958 mRNA upstream 185580 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011971 mRNA downstream 11908 7559663 ~ 7575192 (+) True AMCG00011971
AMCG00011968 mRNA downstream 29601 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011972 mRNA downstream 51753 7599508 ~ 7683253 (+) True AMCG00011972
AMCG00011977 mRNA downstream 147258 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011976 mRNA downstream 231471 7779226 ~ 7782991 (+) True AMCG00011976
TU167656 other upstream 37893 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 304344 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 988159 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 1057436 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1289962 6255950 ~ 6256682 (+) False AMCG00011876
TU167659 other downstream 17053 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 17632 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 412943 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 480308 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 504369 8052124 ~ 8055021 (+) True G133822

Expression Profile