RNA id: TU167710



Basic Information


Item Value
RNA id TU167710
length 354
lncRNA type read_through
GC content 0.51
exon number 3
gene id G133712
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7486669 ~ 7549652 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCATATTTACAGTTTAGTATTTTCCATAGtaaatgtagttattttacCAGGCTGTAATcatctgtgctgttctgtgcagAAAATTCAGTCTCCAAGAAGAGGGGCACCACGGCTCTGTGCTTCTCCCCCTGTGGGCAGCTGCTGGTGTCTGGGCACGGACAGGGCCAGCTGTGCATATGGCACCAGAACTCTGTCATCTGCTGCATGCAGGTCAGTGATTGTTTGGTCAGCTCTGTGGCGTTCATGTCAGAGAGGGAGTTTGCAGTGGGCTGTATGGACAACACGGTGACCACATGGAGACTGGAGTGGACGCCTCCACAGACCACAGCACAGGTTAAGCAGCTGTCTTCTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167600 lncRNA downstream 246309 7224707 ~ 7240360 (-) False AMCG00011957
TU167584 lncRNA downstream 349145 7135868 ~ 7137524 (-) True G133607
TU167564 lncRNA downstream 419997 7066413 ~ 7066672 (-) True G133591
TU167543 lncRNA downstream 515961 6970293 ~ 6970708 (-) True G133571
TU167529 lncRNA downstream 593696 6892745 ~ 6892973 (-) False AMCG00011941
TU167725 lncRNA upstream 1643 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA upstream 1643 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA upstream 1643 7551295 ~ 7575147 (-) False G133714
TU167751 lncRNA upstream 114719 7664371 ~ 7665286 (-) False AMCG00011974
TU167971 lncRNA upstream 454366 8004018 ~ 8052245 (-) True G133891
AMCG00011967 mRNA downstream 32443 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011964 mRNA downstream 52539 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011966 mRNA downstream 77129 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011965 mRNA downstream 88193 7397517 ~ 7398476 (-) True AMCG00011965
AMCG00011957 mRNA downstream 254234 7214237 ~ 7232435 (-) False AMCG00011957
AMCG00011973 mRNA upstream 27662 7577314 ~ 7599762 (-) True AMCG00011973
AMCG00011974 mRNA upstream 101904 7651556 ~ 7676231 (-) True AMCG00011974
AMCG00011978 mRNA upstream 187796 7737448 ~ 7778762 (-) True AMCG00011978
AMCG00011984 mRNA upstream 281652 7831304 ~ 7841349 (-) True AMCG00011984
AMCG00011983 mRNA upstream 306773 7856425 ~ 7870202 (-) True AMCG00011983
TU167599 other downstream 246689 7224707 ~ 7239980 (-) False AMCG00011957
TU167597 other downstream 256957 7224707 ~ 7229712 (-) True AMCG00011957
TU167490 other downstream 662081 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 716375 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 746133 6663132 ~ 6740536 (-) True AMCG00011924
TU168124 other upstream 939548 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 1149759 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 1591172 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1985616 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 2063258 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile