RNA id: TU167720


Basic Information

Item Value
RNA id TU167720
length 852
RNA type TUCP
GC content 0.52
exon number 7
gene id G133712
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7486669 ~ 7549652 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATATTTACAGTTTAGTATTTTCCATAGtaaatgtagttattttacCAGGCTGTAATcatctgtgctgttctgtgcagAAAATTCAGTCTCCAAGAAGAGGGGCACCACGGCTCTGTGCTTCTCCCCCTGTGGGCAGCTGCTGGTGTCTGGGCACGGACAGGGCCAGCTGTGCATATGGCACCAGAACTCTGTCATCTGCTGCATGCAGGTCAGTGACTGTTTGGTCAGCTCTGTGGCGTTCATGTCAGAGAGGGAGTTTGCAGTGGCCTGTTTGGACAACACGGTGACCACATGGAGACTGGAGTGGACGCCTCCACAGACCACAGCACAGGTTAAGCCGCTGTCTTCCTACCCTGTGGACTCCTCCGTGCTCTTCCTGCACTACTCCTGTGTGCTGTTGGGAGCCTGCGCTAATGGCAGCATCATTCACACGATGGATCCCATGCATATTTCCATTGACTGGATGGACAGCTTTCACATCCTTGGAATACAAGAGAATGACAGCAAGAGCCTGTGGTTGGTTGCGGCAGACGATTGTACCTTAGAAGTGGGCTTCGCTTTCGCCATGGGGATAACCTCTAACGCGTTCAACACCTTGGACCTGGATCAGCACGAGAGTTCAGACACTGACAAGAGCTCCTGGACCACGGCTGCCACCATTCATCAAGATGTGCTGGTGTGTGGTGATTCCAGTGGGAATATTTGGTACAAGGCTCTCCCAGATGAGAAGGGTTGGATTAGCAAGAAGCAGGCCCACACAGACCAGATCAGCGTGCTGAAGGTAACGGAGAGAACCATCATCTCGGCATCACATGACCAGAGTGTGAAGCTGTGGGACCGAGGGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167723 lncRNA downstream 8825 7492870 ~ 7500924 (-) False G133713
TU167600 lncRNA downstream 269389 7224707 ~ 7240360 (-) False AMCG00011957
TU167584 lncRNA downstream 372225 7135868 ~ 7137524 (-) True G133607
TU167564 lncRNA downstream 443077 7066413 ~ 7066672 (-) True G133591
TU167543 lncRNA downstream 539041 6970293 ~ 6970708 (-) True G133571
TU167725 lncRNA upstream 1643 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA upstream 1643 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA upstream 1643 7551295 ~ 7575147 (-) False G133714
TU167751 lncRNA upstream 114719 7664371 ~ 7665286 (-) False AMCG00011974
TU167971 lncRNA upstream 454366 8004018 ~ 8052245 (-) True G133891
AMCG00011967 mRNA downstream 55523 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011964 mRNA downstream 75619 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011966 mRNA downstream 100209 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011965 mRNA downstream 111273 7397517 ~ 7398476 (-) True AMCG00011965
AMCG00011957 mRNA downstream 277314 7214237 ~ 7232435 (-) False AMCG00011957
AMCG00011973 mRNA upstream 27662 7577314 ~ 7599762 (-) True AMCG00011973
AMCG00011974 mRNA upstream 101904 7651556 ~ 7676231 (-) True AMCG00011974
AMCG00011978 mRNA upstream 187796 7737448 ~ 7778762 (-) True AMCG00011978
AMCG00011984 mRNA upstream 281652 7831304 ~ 7841349 (-) True AMCG00011984
AMCG00011983 mRNA upstream 306773 7856425 ~ 7870202 (-) True AMCG00011983
TU167722 other downstream 14116 7492870 ~ 7495633 (-) True G133713
TU167599 other downstream 269769 7224707 ~ 7239980 (-) False AMCG00011957
TU167597 other downstream 280037 7224707 ~ 7229712 (-) True AMCG00011957
TU167490 other downstream 685161 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 739455 6768293 ~ 6770294 (-) False AMCG00011928
TU168124 other upstream 939548 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 1149759 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 1591172 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1985616 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 2063258 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile