RNA id: TU167723


Basic Information

Item Value
RNA id TU167723
length 556
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G133713
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7492870 ~ 7500924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcccaacacagcacagcactgtgtttagctgtgtatgtgtgggtgaaTTGCGTGTCCCTTTGCTTGCAGAGATAATCCTGAACCACAATACTTGGACAAGAACTATGTGGAGCTGTATGGATTCAGCGAACAGATTCTGAAATTTGTAGCAGAGAGAGGATCATCCAGACTGTTGGACCACATTGAGCACATTGACAAGATCTACCATGTTCCTCCAGCAGATGGTGCTAAAGAGCAGCTGGGAAAAGTCACAGAGGTCTGCCCATTGCCGCCCACCCTGACAGAGAGGTGGCGCACTGTGCGGGTGTTCATCTCCTCCACGTTCAGAGACATGCATGGGGAGCGAGACATGCTGGTGCGGTCGGTGTTCCCCGAGCTACGCCGCCGTGCCGCGCCACACTGCCTCTGTGTGCAGGAGGTGGAACTGCACTGGGGGGTGTCTGAGGAGGAGTCCAGCAGACACAGGTGTTGTTTGTGGGAGGGGGAAGAGTGCaggaaaggttttttttttaaatactgttttattgagaaagtattttacatttcaataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167600 lncRNA downstream 252510 7224707 ~ 7240360 (-) False AMCG00011957
TU167584 lncRNA downstream 355346 7135868 ~ 7137524 (-) True G133607
TU167564 lncRNA downstream 426198 7066413 ~ 7066672 (-) True G133591
TU167543 lncRNA downstream 522162 6970293 ~ 6970708 (-) True G133571
TU167529 lncRNA downstream 599897 6892745 ~ 6892973 (-) False AMCG00011941
TU167725 lncRNA upstream 50371 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA upstream 50371 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA upstream 50371 7551295 ~ 7575147 (-) False G133714
TU167751 lncRNA upstream 163447 7664371 ~ 7665286 (-) False AMCG00011974
TU167971 lncRNA upstream 503094 8004018 ~ 8052245 (-) True G133891
AMCG00011967 mRNA downstream 38644 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011964 mRNA downstream 58740 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011966 mRNA downstream 83330 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011965 mRNA downstream 94394 7397517 ~ 7398476 (-) True AMCG00011965
AMCG00011957 mRNA downstream 260435 7214237 ~ 7232435 (-) False AMCG00011957
AMCG00011969 mRNA upstream 10081 7511005 ~ 7528563 (-) True AMCG00011969
AMCG00011970 mRNA upstream 31941 7532865 ~ 7554876 (-) True AMCG00011970
AMCG00011973 mRNA upstream 76390 7577314 ~ 7599762 (-) True AMCG00011973
AMCG00011974 mRNA upstream 150632 7651556 ~ 7676231 (-) True AMCG00011974
AMCG00011978 mRNA upstream 236524 7737448 ~ 7778762 (-) True AMCG00011978
TU167599 other downstream 252890 7224707 ~ 7239980 (-) False AMCG00011957
TU167597 other downstream 263158 7224707 ~ 7229712 (-) True AMCG00011957
TU167490 other downstream 668282 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 722576 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 752334 6663132 ~ 6740536 (-) True AMCG00011924
TU167719 other upstream 8825 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 8825 7509749 ~ 7549652 (-) False G133712
TU167712 other upstream 42651 7543575 ~ 7545105 (-) False G133712
TU167732 other upstream 44431 7545355 ~ 7556708 (-) True G133715
TU168124 other upstream 988276 8489200 ~ 8565264 (-) True G134005

Expression Profile