RNA id: TU167730


Basic Information

Item Value
RNA id TU167730
length 1699
lncRNA type sense_over
GC content 0.38
exon number 3
gene id G133714
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7551295 ~ 7575147 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaGTTTCCACCAACTTTAATGAAGCTGAAATACAGTGTAAGGGCACAGAACAATTCCATGTGTATGCAACCTTGCAACAAAATGTTCCATTCATTTGTGGACAGACACAGCCTGTGAGAAAGTGTCCGCCCCCATTCTCCCATACACTGACCTGCCAACAATTACACCCAGTCCAAAATCTGTCAGTGAACTAATATTACTCATcAATAAAACTTAAGTGTTGCCCTTGTAAGAAGTCCTTAGACACTCCGATTCAGATTATGATAAAACAATTAGGCCACTACTATGGTCATCACAAGGCTGAAACGATGATCACCAAACCACAGTGGAGTATAGAGCTCTTGGTTTAGTGCACGCtaagaacattttacaaattgtaCAGAAACATAAAAGCATTCAACTCATATTCTTCCTGacttccttcctctctcctaACACAAATTATATGGTTACAGACATGATTCATGCTTTTACAAACATTTAGTGCATTTGTTTAGGAAAGGCGTGGGTGGACAGACAATGTTGCAAAATGGgaggaataaacaaacaaaagtaagggaaaaaaagcaaagaatcATGTGACTGTATAGAACTgcacaatgtgtttttgctttgaaatgggACTCCTAAATATACACTTTGTGCAAAACTGAAGCTCTCACTAAATTTATGTAAAAACTTCCCCCACAATCAAGGAGANNNNNNNNNNTACAGAACCACAGCTCTTGCCATTGACGACTGATGATTTCTATGTTATGATAAATGGCTGAACTGGAGGGAACGACTGGCAGCTGTGACTGCAAATCagcagaaaataactgaagcaAATTGAAGGCTTTTTGAATAAGATAGACATCTAGGTGGTAGGAAATAGTACATGCTTCCTGTTTAGCAGGCCTCAAACAGCAAAATTGTGATGACAGTGAAGTCCTTCATCTGTACAAAGTGCACATTCCTGTGCCTTTTCCCGCTAGGGGACTTAATCCATGATCTATCTTTCTTTTCTATTGTACGGCATCAGCCTTGGTTTTGGAGCACTGTCTTGGTTGACTTGAGTACAAAGAACTGTGTTTCCCCCAGTTTGTAAAAGCATTGAGGTTAGGGACAGCATTTAACAGAGGGGCAGCAGATACTCTGTTCTTTGTTTCTGCTCCCATCCATTCAGAGTTCAGTTTGAGTCTTCATCTGAAATCATCCTTATCTTTTGTACATGTTAGTCATTTGCTGTGTAAATCAGCATTGCATTCATTCATGGTGTGTCAGTTACTTAGTATGAAGCTTTTATTTCAGCAAAACTCCTTAGTTTAGTTTAGCTTAGTTTTCTTATGTAtgcacatgtatatatgtatgtatgcaattTTACCTtgaaagtgtttgaaaaatgtcctattatgtgtattattattactactagtaaTAGTAAGAGTACTTtgtctatttgtattatatatttctagATTCAATTCAAAATCACTACTTAAATCGGTACTGACGaatttggaaaattaaataGTCATTGCGAGAAATGAAAAGACcagaagagaggaaaaaaaaaacgcataGAGCCCTTTGGTGTCATGAGGCATAAGGTGAACTCATATACATCTGAAGAGACATAAAAACAAGATGCCACGCTCTCTGTGAGAAAACCTACAAATGTTTCCCCTACACACAGTAGTGCCCCTGCCTCTTACTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167710 lncRNA downstream 1643 7486669 ~ 7549652 (-) False G133712
TU167723 lncRNA downstream 50371 7492870 ~ 7500924 (-) False G133713
TU167600 lncRNA downstream 310935 7224707 ~ 7240360 (-) False AMCG00011957
TU167584 lncRNA downstream 413771 7135868 ~ 7137524 (-) True G133607
TU167564 lncRNA downstream 484623 7066413 ~ 7066672 (-) True G133591
TU167751 lncRNA upstream 89224 7664371 ~ 7665286 (-) False AMCG00011974
TU167971 lncRNA upstream 428871 8004018 ~ 8052245 (-) True G133891
TU167983 lncRNA upstream 472082 8047229 ~ 8059876 (-) False AMCG00011995
TU168002 lncRNA upstream 613142 8188289 ~ 8188693 (-) True G133915
TU168111 lncRNA upstream 855841 8430988 ~ 8483657 (-) True G133997
AMCG00011969 mRNA downstream 22732 7511005 ~ 7528563 (-) True AMCG00011969
AMCG00011967 mRNA downstream 97069 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011964 mRNA downstream 117165 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011966 mRNA downstream 141755 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011965 mRNA downstream 152819 7397517 ~ 7398476 (-) True AMCG00011965
AMCG00011973 mRNA upstream 2167 7577314 ~ 7599762 (-) True AMCG00011973
AMCG00011974 mRNA upstream 76409 7651556 ~ 7676231 (-) True AMCG00011974
AMCG00011978 mRNA upstream 162301 7737448 ~ 7778762 (-) True AMCG00011978
AMCG00011984 mRNA upstream 256157 7831304 ~ 7841349 (-) True AMCG00011984
AMCG00011983 mRNA upstream 281278 7856425 ~ 7870202 (-) True AMCG00011983
TU167719 other downstream 1643 7509749 ~ 7549652 (-) True G133712
TU167720 other downstream 1643 7509749 ~ 7549652 (-) False G133712
TU167712 other downstream 6190 7543575 ~ 7545105 (-) False G133712
TU167722 other downstream 55662 7492870 ~ 7495633 (-) True G133713
TU167599 other downstream 311315 7224707 ~ 7239980 (-) False AMCG00011957
TU168124 other upstream 914053 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 1124264 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 1565677 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1960121 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 2037763 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile