RNA id: TU167871



Basic Information


Item Value
RNA id TU167871
length 501
lncRNA type intronic
GC content 0.50
exon number 3
gene id G133820
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8002780 ~ 8003512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATACAGGTCAGCACCAGCTCCCCTAACCCCACccccatgacacacacacacacatacatacatagagacaaacacaaagacacatccATGCACCCACACAtatagagacagacacacacactctctctctctctcacactgctttctgtctgactgtctgtttctctgtgtggtCTGTGATGCAGTTACACAGTGCCCATGCAAATACCCCatccctctctctctctctctctctctctctctctctctctctctctctccccccctgcagatgatgaagaagagtctctgtggagagatgACCATCATAGCAGATCCCAAGCAATAAAAGCACCACCGTGAAGCAGGACGCTGATCCGGCTGCAGCCCACTCCCCATCCCACTGTGTCCCTTCCACTCCCACTGACATCGCTCCTCcataccccccccacaccaatgtgtaacaaagaaataaaacctgacTTCAAGAAGACTGTATGTGTacctctctctctatgtatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167857 lncRNA upstream 76554 7925136 ~ 7926226 (+) False AMCG00011987
TU167816 lncRNA upstream 159309 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 427615 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 446068 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA upstream 455025 7546644 ~ 7547755 (+) True G133682
TU167877 lncRNA downstream 59081 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 76243 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 117387 8120899 ~ 8124699 (+) True G133833
TU168009 lncRNA downstream 193307 8196819 ~ 8197029 (+) True G133921
TU168042 lncRNA downstream 272863 8276375 ~ 8276580 (+) True G133947
AMCG00011986 mRNA upstream 26683 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011985 mRNA upstream 47767 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011987 mRNA upstream 74542 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00011980 mRNA upstream 118519 7878175 ~ 7884261 (+) True AMCG00011980
AMCG00011981 mRNA upstream 182388 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011994 mRNA downstream 17292 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011993 mRNA downstream 25974 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00012006 mRNA downstream 374821 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00012005 mRNA downstream 394514 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012004 mRNA downstream 422508 8426020 ~ 8428680 (+) True AMCG00012004
TU167842 other upstream 31862 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 436434 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 436752 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 494029 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 760480 7236941 ~ 7242300 (+) True G133619
TU167865 other downstream 24551 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 48612 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 379601 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 514502 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 557530 8561042 ~ 8563214 (+) True G133974

Expression Profile