RNA id: TU168009


Basic Information

Item Value
RNA id TU168009
length 211
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G133921
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8196819 ~ 8197029 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATACTTTTGATTTCCTAGTTGATCAACTaagacaaattatatatttataatagtaaTGTGGATGAAAGTCACATACTGTGAGAGATGCTTAACAATGTGGGAAACACTCAGATCAGTGGAGAACACCTAGGACAATTATTAATTCCTACAATTCTCATCTCCATGACTATCAGTGTGAGGATGTGAATGAGAATCATTTAGAAGATTATT

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167885 lncRNA upstream 72120 8120899 ~ 8124699 (+) True G133833
TU167877 lncRNA upstream 79570 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA upstream 96382 8079755 ~ 8100437 (+) True G133832
TU167871 lncRNA upstream 193307 8002780 ~ 8003512 (+) True G133820
TU167857 lncRNA upstream 270593 7925136 ~ 7926226 (+) False AMCG00011987
TU168042 lncRNA downstream 79346 8276375 ~ 8276580 (+) True G133947
TU168067 lncRNA downstream 252014 8449043 ~ 8578268 (+) True G133961
TU168143 lncRNA downstream 422478 8619507 ~ 8623220 (+) True G134018
TU168146 lncRNA downstream 427189 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 502382 8699411 ~ 8700618 (+) True G134033
AMCG00011993 mRNA upstream 159138 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00011994 mRNA upstream 171758 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011992 mRNA upstream 179932 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011986 mRNA upstream 220722 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011985 mRNA upstream 241806 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00012006 mRNA downstream 181304 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00012005 mRNA downstream 200997 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012004 mRNA downstream 228991 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012007 mRNA downstream 267176 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012008 mRNA downstream 312982 8510011 ~ 8520648 (+) True AMCG00012008
TU167873 other upstream 141798 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 164210 8028063 ~ 8032609 (+) False AMCG00011993
TU167842 other upstream 225901 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 630473 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 630791 7564808 ~ 7566028 (+) False AMCG00011971
TU168052 other downstream 186084 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 320985 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 364013 8561042 ~ 8563214 (+) True G133974
TU168537 other downstream 1454320 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1459328 9656357 ~ 9656727 (+) True G134295

Expression Profile