RNA id: TU168143


Basic Information

Item Value
RNA id TU168143
length 2661
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G134018
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8619507 ~ 8623220 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACCACTGTGTACAAATTCTGCCAAAGGCCTGAAATTTGTCAGCGAGGCCGGGCGtgtttttgattaatttccTTTCTCTGTGCCGTGTCTTGTCAGTTAGTCTGTCCGTCTATCAGTCAGCTAGCTAATGTGGTAAAAAATTTAATTAACCTTCTTCACCCTTTCCACTGTTGCTCCATGTGCCAAGGACCAAGCCTTTAGCAGTgtaatgtgaagaaaaaactgaaaaaaataaagaataaaataaaaaaaaatgtagagaaCCGCAAACGATACAAGAGAATTCTATGCaaagtatcagaaaaaaaatactaactgACACGTCTAACATATCTTTCCGTTCTCCACTGGCCACCCCTCTTCCGTGACTCGGAGTCTCGCGAGTGTCGCCCCCATATAAAGTGAAGCGGTTGCTGCTTTTTCTCCACGTTTCCAAAGCGTAGTGAGGCAGGGGTGCATGACCTGGTGAGACGGCattgaaatgaacagaaaaaagaaaagacagaattGTGTAGGTCATGACTTACCAATTAATCTTGAGTTACACTTCATTTTGCACTCATTTGCTTATTGTAATCAAAATTGCCACAGTTACGTATTGGGTGAAATGAATAATATTGAATTTTTCATTTGGTTGGAATTTATCTGCCTAGTCAGCACCAGGTAAACAGACTACTTATTGTTTAATGCAATAAGTAAATCctctcttaattaaaaaaaaatgcatttaaggaGCCAAGTGAGCACCCCATTGCAATCTTCTTATTGGCCTTGATCATCTTATCTGCTTATACATTATTCTTACCTGCACATTTTCCAGCTACTCGGACTAGAGCAGCTTCTTCTCAGCTCACCATTGTcttgtgtgctgtgctgtggttgCTGTCTGTCGGGCGTTTTTTATGACGCGTTGCTGCTGCGGTGTTCACTAGTGACGAAGCGTTCACCATGTCCTGAAGGGGGTGACCACTTAGAACCATCCGGGCAAATTTCCAGAATTTCAGCACTGCAGATTTGGAAGGTTTCATTaagttgttttcctttcaaatatacagttatttaattgttttactaCTAATTGACTACATATCTCCTCAGCCACAACCCCCAAAAGGGTGGTGGCAGCAGATGAGTATCATGACCTGCAATCTGACTGGATTCTGAATGTATCCTTCAGAATATCTTGTATTGTccaaaccaacaaacacatTGTCTTAATTCCATTAAAGAGTAATAATAAGGTGCAGAAGAATTAGGCATTTGGTGTTAATGTATTTTCGCATGCTGAAATGTCTGGATAGCTGGATAGAGAAAGTGGTTTTCTTTCTAGGTTCTTGAGATGTAGATTTTTGTCACTAGATTATTTTGTTCCGAAAAGGGTttcattattagtttttaatttagtttttaaatatgtttggtgatcctttttctttctctcactttTCTGTGAAGATCGTCAGCAGCGTGTAGAATACTTTGTGAGTAGATGGGTAGAAAGAGAAGTTTAACCTCACCTTTACTTCCACAAGCACCAGACATTCCTGTTTCTGGTGCCATGTGGACAGACATGTAGACCGTATGTCTTCAGTCTCTGATTCCATCCCTTCTAATATTCTGGCAAGTACTAGATGTGTTGTGCACTGTGCTCAGTATCCACAGCTTTTGATACAGCATCAATACTGTTCATCATCTGATGTTCTTGTGCTGTTCTTTCCTTCAGCAGTCCTTTAGTGGACCATGCTTGTCATTCCCCATTTCTAGTTACATCACAACTGTTAAATAGTCAGAAGTGTGTCATAGTTGAGTGAGATTCAAGGAGATGATGTTGGAACATGATTTTTTCTTCCGTGAAGATCATGTGAAGGAAAAGTCAGTCATGATCCAGACTGTTGGTTTTTGTATCACTATCAATGCATCAccaacatgttttataaatgtcaaGGCCAGAAAAACCTACACTGGGATGATCGCGTCTTTGTGGGTCACTGGGATAGATTGAAAACATCAGCTCCTTCTCTGGACACTTGCTGTGTAGTTACTATCTGGTGCACATTCAACGCCTGTGATTTTGCTCCAGTTGAGGTTGGAACAattattaatagaaataaataaatctatcaaTACAGGTACGAGTGTCATCTTCCTAGtgctcccctccctcccccccaacatttcaaactatgccaacatttattgtttttacctgATTCAGCACTTATGTGTTATGGGGGTGTGTTAGCCTGAAGCACTGTGATATCATGTCAAACACAGCCTATTGAAACTGCACTAAACAGTACCTTCAAAATCCCTGTCTCTTTGGAGGTGTAACTTTCAGTAAACCGAACCCCATTCGACACCAATTCATTGGATGAAGCACCAGGCCTCTAAACACGATCAACTAAAATCGAAAACCATTCCACCAATTTGTATCTTCATGCAAGAAGTAAACGTATGATATTCAGGCACTTGACTCCCATTGAGGCTGTGCTTTACACACTTTTCCCTTTTGTGTGTCGGAAATGAGGGTTTTGGTTTATATTCAGTTTTGAGTTTGTGGTCTATAACGTGCAAACTGGAAGTCCGTACTTATGCAGTAATTATAACGTTTGTCCACATTCGCAAACCTTGGTTATGTGTTTTGTGAATAGGCTAANNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168067 lncRNA upstream 41239 8449043 ~ 8578268 (+) True G133961
TU168042 lncRNA upstream 342927 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 422478 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 494808 8120899 ~ 8124699 (+) True G133833
TU167877 lncRNA upstream 502258 8062593 ~ 8117249 (+) True G133825
TU168146 lncRNA downstream 998 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 76191 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 79129 8702349 ~ 8702598 (+) True G134034
TU168168 lncRNA downstream 80529 8703749 ~ 8703968 (+) True G134035
TU168209 lncRNA downstream 179303 8802523 ~ 8802878 (+) True G134068
AMCG00012011 mRNA upstream 17631 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012010 mRNA upstream 31526 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012008 mRNA upstream 98859 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012007 mRNA upstream 150679 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012004 mRNA upstream 190827 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012016 mRNA downstream 47269 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012015 mRNA downstream 55684 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012014 mRNA downstream 103603 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012019 mRNA downstream 181881 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012023 mRNA downstream 225106 8848326 ~ 8866791 (+) True AMCG00012023
TU168082 other upstream 56293 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 100481 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 232410 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 564486 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 586898 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 1028129 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1033137 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1229670 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1312706 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1410966 10034186 ~ 10034693 (+) True G134357

Expression Profile