RNA id: TU168146


Basic Information

Item Value
RNA id TU168146
length 2137
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G134019
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8624218 ~ 8627183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCCTCGCTGACAAATTTCAGGCCTTTGGCAGAATTTGTACACAGtggtaaaatggtaaaatctCCCACAGGAAACGGGAGCAATTGCCAAGCTGACCGTTTTTTGCTAAGGTGAGGGGAGCTCTTAGGAGTGTCTTCATGAAGGGGCTCCGTAAAGACTCCATTTGCAGAACAAACTAAGGacagtatttcatatttctgtcAAGCGAACTACAACACTTCAAGAAACACTGTGCCGTGCAATTGAACAAAGGGCGACTTgtgaaagtatatatatatatgtgtgtgtgtgtgtgtgtgtgtttatttatgtctgcTAAGGCTTCAATTGGGTCATGGAAACCACAGTGATAGCGTGTTTATCATCAACAGTCTGGTTCTATAATTGTGTGCAATGGCTGGAATGATTCAAGTCCATGTCTGGCATTAGGAGATACCTACTCTCAAGAGATTGCCAAAACCTGTGTTCATGATCtatgtaattgtattgtcaTCATATGCATTTACGTTATATTGGCTTTAACTGCGCCCTAACATTTGCTGCGCTATAACCACCTGTGATTTGGTTcttggttttaatatttgattaaagATCTCCTaccaaatcatttaaaaaggctTCCCCATGAAACCAGGAATTCAAGAACGTCATTGAAGTTTTACCTTCACAATGTCTCCCTTGCCCTTCCACATGTCTACCACTCCTGCCCCTCTTTCTAAAATATTCTGTTCAACACCTATTAGTTCTTTTcacttatatatttaattaaatatctgcTTTTAATTAACTTCTGAGCTTCTCAATCAACTGTAATTCTGGAATGGAATATTTAGTGGTTTCCAATACAAAGGGAAATAATCCCATATTTTACTTGTAATActttttcacatatatatatatatatatatatatatgctactCCAATACATAATTTATGGATATGTGGGTGCCAACTATTCCTGATAATTGACACTGTCATATTTATCCATCTCATGATAGTTGCACCATTTGTGGTTAGTGAATTAATCGCTGATCTGGCGAGTTTGCAACCCACCAAAAGGCATGTCTCGGTTTTCAGCAAAGCaaaaatctctttaaaaagtgttaaatgttttcacGTTTTCATAGTTCAGTTGTTGCAAATTCATCACAATTTGATCCGCATTCAAATTTCTAAGTCTTAGGTCAGCTGCACCCCCCACAACACCCACCTCATTTGCACATCACAATACATATCAAATCAAACATACCGGGTCTGCAATATCAAGGCGAGGAACTACGATGGCCATATCACAACCGCTGCCACCCGGAGGACAACAGCCTCGCAGTGGTGGCTGGACGTTGTGTATGACGTTTCGTTTTTCCGGTAGGGGAGCACACTCGGGATACGGCGTCCGCGTATCACGCCAAGCACTGTAAACAACTCAAGAGCACATCACCATATATATCGGGAAGCATTCTGTATAGCGAGGGCTTAGAAACACTAAATGCAGACACAGATTTCACAGCCATCATGAAACAGGCAGTGCGCCACAATGTCAGTCCATCTCCAGATAAACATTTGTGGTCAAACTctttacaaacacaaagacagtgGATCTCTCAGTCTTACTACAGGGTGGGGTTTGTCACAGATACCAAGAGTCTCAGGATAAGGGcaattctctctcacacacagagagggaccACTATATAGAAGGAGCACCtccctgcatctctctctctctttctgtgtcttccTGCTCCGTGGAAAGTTGGGCGTCAGGCATCGTTGGACTTGATTGGCTGGTCAGTCGACTAGTTGGTAGGCTGTTAGTGCGTCTGTGTCATGTGTCAGTGGAGAGGGGTGGGCGATGGAGGGCAGGGGGTTGGGGAGAAGGAGGGGGTCGTGGTGCAAATGTCACCCACTTGAACCTCACACTTTCTTGGGGGGCGGGGCGAGCTTGATGATCTCTTCTTCCGAGGGTTGACGAATGATATCTTGTATTTCTTGGCGGAGGGGATGCGCGTCAGCTTGGTGTCGATCTCGTCGTCCTCGGAGATCTTGAGCACGGTGGTCCGGTACTCGATCACGCGGGTGAGCAAGTCCGGGCGCCGCGAGATCTCAAAGATGTGCTCGATGTAGGACAGGTTGT

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168143 lncRNA upstream 998 8619507 ~ 8623220 (+) True G134018
TU168067 lncRNA upstream 45950 8449043 ~ 8578268 (+) True G133961
TU168042 lncRNA upstream 347638 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 427189 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 499519 8120899 ~ 8124699 (+) True G133833
TU168166 lncRNA downstream 72228 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 75166 8702349 ~ 8702598 (+) True G134034
TU168168 lncRNA downstream 76566 8703749 ~ 8703968 (+) True G134035
TU168209 lncRNA downstream 175340 8802523 ~ 8802878 (+) True G134068
TU168230 lncRNA downstream 261534 8888717 ~ 8888946 (+) True G134084
AMCG00012011 mRNA upstream 22342 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012010 mRNA upstream 36237 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012008 mRNA upstream 103570 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012007 mRNA upstream 155390 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012004 mRNA upstream 195538 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012016 mRNA downstream 43306 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012015 mRNA downstream 51721 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012014 mRNA downstream 99640 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012019 mRNA downstream 177918 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012023 mRNA downstream 221143 8848326 ~ 8866791 (+) True AMCG00012023
TU168082 other upstream 61004 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 105192 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 237121 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 569197 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 591609 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 1024166 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1029174 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1225707 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1308743 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1407003 10034186 ~ 10034693 (+) True G134357

Expression Profile