RNA id: TU168166



Basic Information


Item Value
RNA id TU168166
length 1208
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G134033
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8699411 ~ 8700618 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TATACAGACAACTGCGTAGAACCTATTCTGAGTATCCATCACAGTGGAAAGGCTacataggaaaaaaacaaaaaatacattagtcACTCTATAGTATGATTTGCAGTCAGATTCAGTTGCCTCCAGAAGCTCATGTCGTTGTTTCACAGTATCACACATTACAGCCACAGCTGGAAAGCTGCAGAGATCAATTTAGGGGTGGTGTTGTGACTTACCACTCTCTTCTTCCTCAATTCTCCCGAAATGAGTCGAGCTTACGAATCTCAGAGGGACCAATGATCCTCACTTACTTCATGAGATGGATTATTTGAACCCCTGTCCTATTGTGGCCCCTCACTCACTCCCACACTCAGGGCTTGGTTTATTCTGTCAGGGGAAACTGTCTTTCAGAGAAGTGCTTGGTCCCTGGCTCCTACCACACCACCACAGATcgtattcattttctttgcaCGTTTCCTTACGCCAAACTGAACATAACTTGTGTGAGGCTCACTGACTGTGCATTTGAAACACCATTATCTTGCTCGGTGCAgaggacacagacagagaggacaTTGTGTGGGAGCCACCTCACGGCCACAGCGCCACTTAACATTTTCTCAGGAGATGTATTCCCATTCAACTTACACAATGTGACACAACCACCCTGCGAACTGAGaactctgcccccccaccacagcTGCAAGGAGCTGGGTTTTTGCAGGTTCAAGAGATTAAGAGAGATGGTACTTTAATTTCACTAACAGCCCTCTTGTGAGCAAATAGCTATGCTGGTGGTTTTAATCCTATGTGATTATTTAGTCTAAAACAGCTCCGTGTTGTTCAATATGAGTTGTGCGCAGTTTACATTCTAACGGGCTGGTCATGCCACCATTCACCACATTAGTTACATTTCCAAGTGTCAATACAGACACAGTCATCACAGTGAACCTCCCAATGTGTCGTTTTCTATTGACTGAGAGggatgaaaatacaaattagatACAATTGCTTCAAGTCAGAGCCACGATCCTCCATTGAGAACCCAGTGtgaggtgtttttgttttttcttgcgtgcatttatttcacaaacagTTTCTCGTGTGCACTTTATTGAACACAGCTTTCAATCTGCTCCCCCACTACCACCATCACTGAAAAACTACACTCCCAGGCTTGTCTCAAATTGGACCCGCATGAGCTTGTTGATTCCAAaaggcattaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168146 lncRNA upstream 72228 8624218 ~ 8627183 (+) True G134019
TU168143 lncRNA upstream 76191 8619507 ~ 8623220 (+) True G134018
TU168067 lncRNA upstream 121143 8449043 ~ 8578268 (+) True G133961
TU168042 lncRNA upstream 422831 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 502382 8196819 ~ 8197029 (+) True G133921
TU168167 lncRNA downstream 1731 8702349 ~ 8702598 (+) True G134034
TU168168 lncRNA downstream 3131 8703749 ~ 8703968 (+) True G134035
TU168209 lncRNA downstream 101905 8802523 ~ 8802878 (+) True G134068
TU168230 lncRNA downstream 188099 8888717 ~ 8888946 (+) True G134084
TU168296 lncRNA downstream 493944 9194562 ~ 9195917 (+) True G134141
AMCG00012015 mRNA upstream 964 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012016 mRNA upstream 28587 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012011 mRNA upstream 97535 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012010 mRNA upstream 111430 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012008 mRNA upstream 178763 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012014 mRNA downstream 26205 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012019 mRNA downstream 104483 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012023 mRNA downstream 147708 8848326 ~ 8866791 (+) True AMCG00012023
AMCG00012022 mRNA downstream 183011 8883629 ~ 8885897 (+) True AMCG00012022
AMCG00012024 mRNA downstream 201678 8902296 ~ 8910971 (+) True AMCG00012024
TU168082 other upstream 136197 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 180385 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 312314 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 644390 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 666802 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 950731 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 955739 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1152272 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1235308 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1333568 10034186 ~ 10034693 (+) True G134357

Expression Profile