RNA id: TU168169


Basic Information

Item Value
RNA id TU168169
length 2231
RNA type TUCP
GC content 0.51
exon number 1
gene id G134036
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8699411 ~ 8701641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATGACTGCGCCGGCTTCCGGGACGACACAGCGGAGGAGACGGCACACACCGGGGAGACACTGTACTCCCTTGCACGACTGGACTCCCCTCTGCGCCGCTTCCTCAGCCCTTACTTTTGTGACGCCTGCGGGAAGTGCTTTAAGGGCTCGGGCACGCTGAAGAggcaccagcgcattcacaccgGGGAGTCCCCTTTCCACTGTGCCCAGTGCGGCAAGAACTTCAAGGACTCGGGGGCCCTGAAACGCCACCAGCGCATCCACACGGGGGAGCTGCCCTACCACTGCACCCAGTGTGAGAAGAAGTTCCGCCAGCTGGGGCACCTGAAGGAACACCAGCGCATCCACACGGGCGAGACGCCCTTCAACTGTAGCCAGTGCTGCAAGAGCTTCAGCCAGCTGGGCAACCTGAAGACACACCAGCGCATCCACACGGGCGAGACACCGTACCGCTGCGATGACTGTGGCAAGAGCTTCCGGCAGATCCGGCAGCTGCGCACCCACCAGCAGGTGCACACGGGGCAGACGCCCTTCTGCTGCGCCGAGTGCGGCAAGGTGTTCAAGTGGATGTGCTCGCTGAAGGAGCACCAGCGCATCCACACGGGAGAGTGTCCCTTCGAGTGCCAGGAGTGTGGCAAACGCTTCAAGGGCGCCGGCACGCTCAAGAAGCACCGGCGCATCCACACGGGCGAGACACCGTACCGTTGCGCCCAGTGCGGCAAGGGCTTCAAGGAATCGGGGGCCCTGCGCAGGCACCAACGCATCCACAGCGGGGAGACGCCCTACCACTGCGGGCTCTGCAGCAAGAAGTTCAGCCGCGTTGACCACCTCAAAGACCACCAGAGGGTGCACGGCTCTGAGAATTAagactgttattttatttgttattttgcttgtttgtcagtttttttgttacattgtttgtttctttgttttataggATTTGTATTCGGGGTGGGGCGGAAGAGTTTCGTGGGACGTGTTTCGAGGCCGATGTCCTGTTCTGattgtgtaattatttatttttaatgccttTTGGAATCAACAAGCTCATGCGGGTCCAATTTGAGACAAGCCTGGGAGTGTAGTTTTTCAGTGATGGTGGTAGTGGGGGAGCAGATTGAAAGCTGTGTTCAATAAAGTGCACACGAGAAActgtttgtgaaataaatgcacgcaagaaaaaacaaaaacacctcaCACTGGGTTCTCAATGGAGGATCGTGGCTCTGACTTGAAGCAATTGTatctaatttgtattttcatccCTCTCAGTCAATAGAAAACGACACATTGGGAGGTTCACTGTGATGACTGTGTCTGTATTGACACTTGGAAATGTAACTAATGTGGTGAATGGTGGCATGACCAGCCCGTTAGAATGTAAACTGCGCACAACTCATATTGAACAACACGGAGCTGTTTTAGACTAAATAATCACATAGGATTAAAACCACCAGCATAGCTATTTGCTCACAAGAGGGCTGTTAGTGAAATTAAAGTACCATCTCTCTTAATCTCTTGAACCTGCAAAAACCCAGCTCCTTGCAgctgtggtgggggggcagagttCTCAGTTCGCAGGGTGGTTGTGTCACATTGTGTAAGTTGAATGGGAATACATCTCCTGAGAAAATGTTAAGTGGCGCTGTGGCCGTGAGGTGGCTCCCACACAAtgtcctctctgtctgtgtcctcTGCACCGAGCAAGATAATGGTGTTTCAAATGCACAGTCAGTGAGCCTCACACAAGTTATGTTCAGTTTGGCGTAAGGAAACGtgcaaagaaaatgaatacgATCTGTGGTGGTGTGGTAGGAGCCAGGGACCAAGCACTTCTCTGAAAGACAGTTTCCCCTGACAGAATAAACCAAGCCCTGAGTGTGGGAGTGAGTGAGGGGCCACAATAGGACAGGGGTTCAAATAATCCATCTCATGAAGTAAGTGAGGATCATTGGTCCCTCTGAGATTCGTAAGCTCGACTCATTTCGGGAGAATTGAGGAAGAAGAGAGTGGTAAGTCACAACACCACCCCTAAATTGATCTCTGCAGCTTTCCAGCTGTGGCTGTAATGTGTGATACTGTGAAACAACGACATGAGCTTCTGGAGGCAACTGAATCTGACTGCAAATCATACTATAGAGTgactaatgtattttttgtttttttcctatgtAGCCTTTCCACTGTGATGGATACTCAGAATAGGTTCTACGCAGTTGTCTGTATA

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03013 Nucleocytoplasmic transport
ko05166 Human T-cell leukemia virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168111 lncRNA downstream 215754 8430988 ~ 8483657 (-) True G133997
TU168002 lncRNA downstream 510718 8188289 ~ 8188693 (-) True G133915
TU167983 lncRNA downstream 639535 8047229 ~ 8059876 (-) False AMCG00011995
TU167971 lncRNA downstream 647166 8004018 ~ 8052245 (-) True G133891
TU167751 lncRNA downstream 1034125 7664371 ~ 7665286 (-) False AMCG00011974
TU168210 lncRNA upstream 100766 8802407 ~ 8802986 (-) True G134069
TU168298 lncRNA upstream 452795 9154436 ~ 9191292 (-) True G134143
TU168438 lncRNA upstream 712675 9414316 ~ 9416458 (-) True G134226
TU168546 lncRNA upstream 954715 9656356 ~ 9656645 (-) True G134298
TU168676 lncRNA upstream 1090669 9792310 ~ 9799446 (-) True G134396
AMCG00012012 mRNA downstream 71736 8626155 ~ 8627675 (-) True AMCG00012012
AMCG00012013 mRNA downstream 82323 8613948 ~ 8617088 (-) True AMCG00012013
AMCG00012009 mRNA downstream 224361 8474106 ~ 8475050 (-) True AMCG00012009
AMCG00012003 mRNA downstream 345036 8349300 ~ 8354375 (-) True AMCG00012003
AMCG00011999 mRNA downstream 431015 8266797 ~ 8268396 (-) True AMCG00011999
AMCG00012017 mRNA upstream 2141 8703782 ~ 8710771 (-) True AMCG00012017
AMCG00012018 mRNA upstream 37936 8739577 ~ 8748073 (-) True AMCG00012018
AMCG00012020 mRNA upstream 94499 8796140 ~ 8805330 (-) True AMCG00012020
AMCG00012027 mRNA upstream 206041 8907682 ~ 8928638 (-) True AMCG00012027
AMCG00012033 mRNA upstream 299061 9000702 ~ 9002383 (-) True AMCG00012033
TU168124 other downstream 134147 8489200 ~ 8565264 (-) True G134005
TU167732 other downstream 1142703 7545355 ~ 7556708 (-) True G133715
TU167719 other downstream 1149759 7509749 ~ 7549652 (-) True G133712
TU167720 other downstream 1149759 7509749 ~ 7549652 (-) False G133712
TU167712 other downstream 1154306 7543575 ~ 7545105 (-) False G133712
TU168269 other upstream 439183 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 833627 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 911269 9612910 ~ 9625601 (-) False AMCG00012058
TU168523 other upstream 911269 9612910 ~ 9625601 (-) False AMCG00012058
TU168524 other upstream 911269 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile