RNA id: TU168438


Basic Information

Item Value
RNA id TU168438
length 597
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G134226
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9414316 ~ 9416458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGTATATGGGTCCGAGAACACTTCTCTCCTGAGTTGGTACTGCATTTAGCCTCAAGTTGGTCCCTTTATATAAGCTATTGACACTGTCTTTTTTTCCATTCCTGACAGAACAAGTCTCCCAGCTGAAAATAGATCATTCCAGCTTTGTAAGGAACGGGAACTGCTATTTTACTTTACACTGCTCTGTactaaatgaaacaaatgtctCAATCCACTGGACACAGTCTTCAATGGGTATCATACACAATGGAAGCACATTGCATGGATCCATCCACCCAGAAAATGCGGAGACAGATGTGTACATGTGTTTAGCGTACAATCATGTCAGCAACAGCTCAGCAACTTTTTCGAAAGAGAAGCTGCAATGTTCTCAGGATTCCACAGATCTCGGATATCTTGCCATACTTTGTATACTACTTTTGGTAATCATTGGATGTATCATTTTTGTAAAAATTGAGAAAACAAGCTCAATCAAGTTATGATTTTACAAGTAAACATTCAACATCTATGGAGTTTCAACATGTCGTCAATGGGAATGCTGCAAACAATGGAAGGACTACCTCAGACATCAACGGTGGACTTCTATCAGCGGTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168298 lncRNA downstream 223024 9154436 ~ 9191292 (-) True G134143
TU168210 lncRNA downstream 611330 8802407 ~ 8802986 (-) True G134069
TU168111 lncRNA downstream 930659 8430988 ~ 8483657 (-) True G133997
TU168002 lncRNA downstream 1225623 8188289 ~ 8188693 (-) True G133915
TU167983 lncRNA downstream 1354440 8047229 ~ 8059876 (-) False AMCG00011995
TU168546 lncRNA upstream 239898 9656356 ~ 9656645 (-) True G134298
TU168676 lncRNA upstream 375852 9792310 ~ 9799446 (-) True G134396
TU168678 lncRNA upstream 393340 9809798 ~ 10182061 (-) False G134397
TU168689 lncRNA upstream 436443 9852901 ~ 10344049 (-) False G134402
TU168692 lncRNA upstream 436443 9852901 ~ 9867138 (-) False G134402
AMCG00012053 mRNA downstream 15907 9384426 ~ 9398409 (-) True AMCG00012053
AMCG00012054 mRNA downstream 41635 9361028 ~ 9372681 (-) True AMCG00012054
AMCG00012050 mRNA downstream 80325 9321611 ~ 9333991 (-) True AMCG00012050
AMCG00012051 mRNA downstream 116742 9291483 ~ 9297574 (-) True AMCG00012051
AMCG00012045 mRNA downstream 218607 9178467 ~ 9195709 (-) True AMCG00012045
AMCG00012068 mRNA upstream 136103 9552561 ~ 9553607 (-) True AMCG00012068
AMCG00012066 mRNA upstream 138735 9555193 ~ 9556954 (-) True AMCG00012066
AMCG00012064 mRNA upstream 141039 9557497 ~ 9560627 (-) True AMCG00012064
AMCG00012062 mRNA upstream 153170 9569628 ~ 9578057 (-) True AMCG00012062
AMCG00012065 mRNA upstream 163098 9579556 ~ 9596492 (-) True AMCG00012065
TU168269 other downstream 269021 9140824 ~ 9145295 (-) True G134119
TU168169 other downstream 712675 8699411 ~ 8701641 (-) True G134036
TU168124 other downstream 849052 8489200 ~ 8565264 (-) True G134005
TU167732 other downstream 1857608 7545355 ~ 7556708 (-) True G133715
TU167712 other downstream 1869211 7543575 ~ 7545105 (-) False G133712
TU168464 other upstream 118810 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 196452 9612910 ~ 9625601 (-) False AMCG00012058
TU168523 other upstream 196452 9612910 ~ 9625601 (-) False AMCG00012058
TU168524 other upstream 196452 9612910 ~ 9625601 (-) False AMCG00012058
TU168674 other upstream 374383 9790841 ~ 9791348 (-) True G134395

Expression Profile