RNA id: TU168453


Basic Information

Item Value
RNA id TU168453
length 4520
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G134236
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9534314 ~ 9538974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGAAAGGCTCATTTTCACGTGAAGGAAAACTCCATTTCTGATAGAGATGGAAAAAAGCGCCATTCCTCTAGAATGGGAAACAGAAAGccaaaatgcatgcatacataccaacatacttacatacataccaacatacttacatacatacatatgaacCGAGTGCTCTAGTGACAATGCTGTGGATTGTTTTTCTCCAGATGTAACACTATGCATGGAAGAGGTATTTTAACTTGACGTTGATATGATGATGACTTTCCTTTACTTTAATACTTAAGTAAGAGGTGTGCTTTATAAGCATATCTGGAGCCCTGGATGATCCTATGTGAAATTAGCATTTAAGTACATATAGCCATATGTAAAGAAACTGACACCCAGGTGTTGCCATATTGGGTCATTCTGCTGTGTGGTTAAAAGTCAATGCAGGCTTTATATATCAGAGCCACAATGGCAGTTTTTTTCCAGGTCTGCTGTGTTCCTTGTTTGTGTGGCTGGTGACACCTAGAGGTGAGTTGCAGATAGCACAAATGTCCAACTAAAACCCAGCCCTGCATCTTAAAATGGCTTAGTATTGTCCccactgaaaaaaatgtatgaaaaacaatagTTATATAGGGGTTTGGCCTGTTGGGTCTCATTCCCCTCATATGAAATATGCAAAAGACATGTTTATAGACATGACTGATAGGGATAAAAGCACAAGGTAAAATTCGGGGGCCAAGTAGACAACCTTTTAAAGAAGGTTTGTGACACtaccacagaaacacagcactTTCTCATAGTTACAGCTGCACCATTTACAAAAACGTACCTGAGTCATACACCATTTCTCAGTTTGTAATTCTAGAacattcctttattttgtttgttttgggggttggttgggggggtggcggggggTGAAAAAGAGACCAAAAGACTGTGTGACCAAACTTCAGCTCTCGATGCCTGGAGCAATGGAGTTGACTTGAGGTGAAAATgggtttttgttgtgtttggaaGGAAAGACATATACTGTATTTGCAATGCTTAAACTGGAGATGTGAAAGGTGTGGCTGAAGTAACATGGAAGCGTGGTGATCAAAACACGAGTATCTAAAtcctttgtttcattttttgggAGGGATTTGTATCAAACCCTGGTGAGTTTTCATAAAAATGGAATTACTGCATCGACGAACATTGTTATAGGCAAGGTGGAAAAAATATACCGTACTCTGTTACTCATCATTGTATACCTAGGTGTCTGAAGACAATTCTGCTTCTTTAGAGCCTGTCACATTCATTTCATGTTACAGTTCATAGGGGGAAATATTTTCTCCCCTATTACTGTTCAACAAGAGCTTTATCAGCTTGGTCACCCTCACTGCACAGGTGAGTGCTGTCTCTATAATGTTGTCGGGAAGCTGAACAGTATACCTGTTTCACACGTGACCTTAATGAGAATTAACCCCCGGCCCACTTTAGCTCGAAGTTTCTAGCcaggtactgtactgtatgcGTACTTATCCCTTTATCCTTCTTGTGTTGGTACCTTCAACAGCAGCAGGGTTTCGTAAAGTCTTTCAGCACTCGATTGTCAGCGTAGGAGGCCACAATGGGGGAGAATCCGATAACAAAGCTGCATTCCGGAGGTCTCTCGGGAAGCCCAATCCTGGCCTAGGCTGACCTGCTCTGTTAAAAACGAGCCTTGTCTACTCAGTATTTCACATTCTTTCCATTTGTACAAGGCCAGCAATTCCCCTCTAGCCAGCGCCTGCCTagaacagaacacaaaacagaatGATACGACGATTGATCACAAACAAGGcatcctttgtttgttttttgtttttttttcccccctgcaCAAGGACAAAGACAGCCTCTTGACAATCCCTCAGGATAACTTGCAAAGACTTTGCTGAGAACCCCCAAAGATTGTGCTTTGCACCAGTcattcaaaaaacaacatatagaGGCTGTTAAGAGCATCCCGTCTGGGTTGTCGTCTGTGACAGTCAGGTTGTCCGCAGGCTCAGATCAGTATACCAGGGCCCGAGATTGTGTCCAGCTACCCATGAGTGTATGACGTCAGGGTTCAGGGGATACAAAAACTAGCCGTGGCAATCTGAAGTGCCGTTGACTCCATTCCCATTCCGTTTGCGTCGTTCGGGAGGAGGTGAATTGAGTTTTATGGCTGAGCACATATTACAACGGAAgagatacatttaaaaggaaagagTTTTAATTCTAGTTTCTCTATGGGGAAAGTCAAGAATTCAATAAATAAGTCAATGtcattttcttatatataatttttaaactCATTTATTAAATGGCTGTTTCAGGTGCCCCAGTCCAGTTGCAAGTGCAGTTTGTGTGGCAGGGAATGTGCAACCGAGCACTTTCTTGCAACTTTCAAATAGGGCGAATTGGGGGGGGTGGCAGGGCAGCTTCTGggtgttttcttatttaaatttttGACATTGTTCACTTCACTCTTGCTGAGTTGACTTGCGTGCGTTAAAGCAGGTACCTGCAGATATAACCTTCTCTTAAGCCAACAACTTCCAATGTTTTCTGACATCTTCCAGGACCTTGTAAATACGTCACCGACATTCCCGTTTTCTTTTCGGTTtcgtttcttttgttttgtctgttttttttcgAAAAGTGTACTGTTcccgtttattattattttatggtaaATATTATGACtatgttttattactgttattatcgttattattttgtattctgaatGACGAAGACAATGAAcaaaaagtggaaaacaaacaaaaactataaaaaatgaCCTGTGTACatctgatgaaaaaaaaaacataaaaacgaacaaaaaaaaagaaatatttatATGCACTACtatacttttgtattattactattggtACGACGCGTGTCTTGAAGAATTTTCTGTATATTGAATTTACTGTTACGTTGTTGTTATTCGGGCGTGTTTTACTGTAAGCGACAAAAATGAAGCTGTAATTTTTAATGTAGCTCCACTGCAACCACCAGCTTTGGGCCTGTTTGCATCCTGAGCAGATCTCAGATGTGACACAGGACCCATTTATCTTTTCGAAGGTGAACTGAGAGCGCCACGTCGCTCTGTTAGACTGTTCAAGGAGTGCAGTGTATTGCACAGAAGGGTATCTGGGCCGGCACAATATTTTTGCTATGCTGATATTTACtacaaaacacattcatgttAATGAGCAGAACTGTGGTGGAGTTAACAGTAACCCACACACTAGTATCGAATGCAGTTGCAGATTTAGGAACTGTGGTCTATGTAAGCACAGCTGTCTGTACCTGCCGATTAGGTAGCTCAGTATATTGGGTACAGCAAATTGAATACCCATAATACTCtcccactacacacacacaaaggataTAAATGCCTTTGATATTCTTGTGAAGAAAATGAgatgctttaataaaataatctgttgaAGGACACTGAACTTTACAGCCTCATTCGCTTACAGTAAAAAGTCAATAaatcaaaaaaaggaaaaatatgtatttcgtTCAATGGTTTGTCTGACCATAGTTTAGAAGCATAAGCAATACATGAGGAAGTGCTACAGACAGTTGGACAGAACAGGGCAATGTTGTGAGTGTGGCCTTATGTTTAGAAGAAGCAAAAGATTCAGAAGATTGAGTCCTTTTTCGGATGGGGAACTGATCTTAGTTGTACACGGTTTCAAAGACTCGCATTCCtgcctacaaacacacacacctcggAGCATAAGATCATTAGCTGCCAGTAATGAGTTGTTTTGGCATCATTTCAAGCtttgatttcatttcaaatgcCATGTAAACAAGGTACTGTGATGCAGCTGTACTTCTGCTGGAGATGGAAAATGTTTGCCCTCATCTTATAATGATAACTATGGAGGAGAGACATCTCAATTAGGCTGGCTGTTGGTGCTTTTGGAAGAACTGATTTGTGTAACGCAGCCCACACTGGtgtgcaaaattaaaaactgaaccTGCAGAAATCACATTCTAACTCccctgtattgtactgtatcaCAAACACCAGTTGGCTATTTTAAGATTCAACTAGAGGGGTAATTCTCACACTACAGGAGAAAAAAACGGTAGCAAGCAGATTGCATTTTAGTTTGGTCACCAAAAAAGGACTCAATATTCTGAAATGattggaaaaaagaaacaaaaagtaataaaatggcACTTCTTTAAATCAAACagtcacattattttatttcttgttttttgtttgtttaatttgattttatttcacattctaTGTATGCACCTTTTAGAtggatcattatttttgtttgtttgttggttggtttgttattttcaaattgatttgattttttgcTCGTCTTTCCAGTATCTTAACCATAGGAGCTCAGTATGGACTCTCTTTTTCTGCTCAGTTTATAAGATACTGTATGTTCTCATAAAGgagtgtcttttattttattttatgatatttttttcaaaatgtatgtaattatttttccacggtattataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168426 lncRNA upstream 119428 9401454 ~ 9414917 (+) True G134222
TU168335 lncRNA upstream 224414 9280885 ~ 9309931 (+) False AMCG00012043
TU168296 lncRNA upstream 338428 9194562 ~ 9195917 (+) True G134141
TU168230 lncRNA upstream 645399 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 731467 8802523 ~ 8802878 (+) True G134068
TU168499 lncRNA downstream 28416 9567280 ~ 9571718 (+) True G134259
TU168528 lncRNA downstream 107162 9646026 ~ 9646444 (+) True G134284
TU168540 lncRNA downstream 114988 9653852 ~ 9654600 (+) True G134292
TU168553 lncRNA downstream 137914 9676778 ~ 9679102 (+) True G134305
TU168577 lncRNA downstream 230793 9769657 ~ 9770685 (+) True G134326
AMCG00012055 mRNA upstream 104 9508741 ~ 9534241 (+) True AMCG00012055
AMCG00012052 mRNA upstream 93718 9438327 ~ 9440627 (+) True AMCG00012052
AMCG00012049 mRNA upstream 215709 9311422 ~ 9318636 (+) True AMCG00012049
AMCG00012048 mRNA upstream 226538 9305545 ~ 9307807 (+) True AMCG00012048
AMCG00012043 mRNA upstream 248139 9279988 ~ 9286206 (+) True AMCG00012043
AMCG00012056 mRNA downstream 3150 9542014 ~ 9544985 (+) True AMCG00012056
AMCG00012067 mRNA downstream 96632 9635496 ~ 9643331 (+) True AMCG00012067
AMCG00012057 mRNA downstream 120885 9659749 ~ 9673361 (+) True AMCG00012057
AMCG00012069 mRNA downstream 173358 9712222 ~ 9719197 (+) True AMCG00012069
AMCG00012075 mRNA downstream 441026 9979890 ~ 9999729 (+) True AMCG00012075
TU168082 other upstream 971131 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 1015319 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 1147248 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1479324 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1501736 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 112485 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 117493 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 314026 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 397062 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 495322 10034186 ~ 10034693 (+) True G134357

Expression Profile