RNA id: TU168537



Basic Information


Item Value
RNA id TU168537
length 1197
RNA type TUCP
GC content 0.49
exon number 3
gene id G134291
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9651349 ~ 9653234 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGACCACAGCTGGGAGCACACCTTAGGAAAGCAACGTGGAAGTGTGATCTACAGCTCCCTGCGGCTGAACCACTTCACACCCCAGGGCTATAGGTGACTGGCAGGTAAAACATAGCCaaggaattaaaaatattgtacacaTCTTAAGTGGTAGCACTTTGTATAAgggatacaaacacacacccacaccacattatttaacacaacaaaaacactacaACTAATACCAAGCTAGAGACAAGATTTTATTTCGGAAGCAGAATGTTAtgagcatttttgttttaaattagtttacaGGCAGATGAGTTTTTCATTCAGGGCGATTTGGGCTTGAGTCAGATTTGACAGGTAGGTCACCATCAACAGGTGTTAATGTTGCTGTTCAGCATGCTTTCGAAGTCTTCCGCCGAGATCTTGGGAACTTTGTTGACCAGGTCTGTGAGGAAGCGGCCCACCGTGTTGTCAGCAGTTACCTTCCCGGCAGCACATCCTCGGTGTAAGTCAGCACCGTGGCCAGCATGTCCTGGATGCGGGAAGATGCTGCGCCGACTTGTTCCAGGTCGGTGGTCAAGCCGATGGTCCGGCCGGGGCTCGTGCGCGTGCGCTGGAGGAGGTCGACTGGGGGAAACGAGAGCAGGGCGGGTAggagtgagagacagagcaaGAGAAACTGACCTCAACTGGGCGGGCAACCGAGAGGTTTCCaaagaaaatatacacacatacacaaataccaAATAATACATGTCCCTGTAGAGCAGGGGCGGctagccctggtcctggagagccgcatggtctacaggtttttgttctatgcagatcgttaactgctaaattgaaccaattgtgggtcttaaataggcaaaatgtccctgtgttcaaggcaTCCAttgattggtgatttagagtGCTGGAAAGCCtgaaggattgtggctctccaggaccagggttggccagCCCTGCTCTAGAGTATTTTAAAGGtgaatgtattctgtattcagAGCCTTCATGCCAGTGGTGACCGAAAGGATTGCCGCCTTTGAGAAGTGCCAACCACCATACGGTCTGAACGTCTGTTTAGCAGGCAGTTAATACTCACCCCCGATTCTCTCCGTGTCGTAGGAAATGTATTTCACCGTCAGAGGGGTGAACATTACACCCACGGTCTTCCCTGGCACTCCCATTTGTGCGCTGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168528 lncRNA upstream 4905 9646026 ~ 9646444 (+) True G134284
TU168499 lncRNA upstream 79631 9567280 ~ 9571718 (+) True G134259
TU168454 lncRNA upstream 112375 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA upstream 112485 9534345 ~ 9538864 (+) False G134236
TU168426 lncRNA upstream 236432 9401454 ~ 9414917 (+) True G134222
TU168540 lncRNA downstream 618 9653852 ~ 9654600 (+) True G134292
TU168553 lncRNA downstream 23544 9676778 ~ 9679102 (+) True G134305
TU168577 lncRNA downstream 116423 9769657 ~ 9770685 (+) True G134326
TU168586 lncRNA downstream 194288 9847522 ~ 9923017 (+) True G134335
TU168614 lncRNA downstream 233624 9886858 ~ 9945740 (+) True G134346
AMCG00012067 mRNA upstream 8018 9635496 ~ 9643331 (+) True AMCG00012067
AMCG00012056 mRNA upstream 106364 9542014 ~ 9544985 (+) True AMCG00012056
AMCG00012055 mRNA upstream 117108 9508741 ~ 9534241 (+) True AMCG00012055
AMCG00012052 mRNA upstream 210722 9438327 ~ 9440627 (+) True AMCG00012052
AMCG00012049 mRNA upstream 332713 9311422 ~ 9318636 (+) True AMCG00012049
AMCG00012057 mRNA downstream 6515 9659749 ~ 9673361 (+) True AMCG00012057
AMCG00012069 mRNA downstream 58988 9712222 ~ 9719197 (+) True AMCG00012069
AMCG00012075 mRNA downstream 326656 9979890 ~ 9999729 (+) True AMCG00012075
AMCG00012076 mRNA downstream 346504 9999738 ~ 10004091 (+) True AMCG00012076
AMCG00012074 mRNA downstream 361610 10014844 ~ 10016191 (+) True AMCG00012074
TU168082 other upstream 1088135 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 1132323 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 1264252 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1596328 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1618740 8028063 ~ 8032609 (+) False AMCG00011993
TU168543 other downstream 3123 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 199656 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 282692 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 380952 10034186 ~ 10034693 (+) True G134357
TU168638 other downstream 480793 10134027 ~ 10134592 (+) True G134365

Expression Profile