RNA id: TU168546


Basic Information

Item Value
RNA id TU168546
length 290
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G134298
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9656356 ~ 9656645 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgtagccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccaggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactctgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168438 lncRNA downstream 239898 9414316 ~ 9416458 (-) True G134226
TU168298 lncRNA downstream 465064 9154436 ~ 9191292 (-) True G134143
TU168210 lncRNA downstream 853370 8802407 ~ 8802986 (-) True G134069
TU168111 lncRNA downstream 1172699 8430988 ~ 8483657 (-) True G133997
TU168002 lncRNA downstream 1467663 8188289 ~ 8188693 (-) True G133915
TU168676 lncRNA upstream 135665 9792310 ~ 9799446 (-) True G134396
TU168678 lncRNA upstream 153153 9809798 ~ 10182061 (-) False G134397
TU168689 lncRNA upstream 196256 9852901 ~ 10344049 (-) False G134402
TU168692 lncRNA upstream 196256 9852901 ~ 9867138 (-) False G134402
TU168690 lncRNA upstream 271267 9927912 ~ 10346189 (-) False G134402
AMCG00012063 mRNA downstream 329 9651257 ~ 9656027 (-) True AMCG00012063
AMCG00012061 mRNA downstream 6337 9645594 ~ 9650019 (-) True AMCG00012061
AMCG00012060 mRNA downstream 22207 9627154 ~ 9634149 (-) True AMCG00012060
AMCG00012058 mRNA downstream 30230 9612479 ~ 9626126 (-) True AMCG00012058
AMCG00012065 mRNA downstream 59864 9579556 ~ 9596492 (-) True AMCG00012065
AMCG00012059 mRNA upstream 26028 9682673 ~ 9688681 (-) True AMCG00012059
AMCG00012071 mRNA upstream 91624 9748269 ~ 9748552 (-) True AMCG00012071
AMCG00012070 mRNA upstream 111867 9768512 ~ 9774041 (-) True AMCG00012070
AMCG00012072 mRNA upstream 229765 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012073 mRNA upstream 314348 9970993 ~ 9975251 (-) True AMCG00012073
TU168522 other downstream 30755 9612910 ~ 9625601 (-) False AMCG00012058
TU168523 other downstream 30755 9612910 ~ 9625601 (-) False AMCG00012058
TU168524 other downstream 30755 9612910 ~ 9625601 (-) False AMCG00012058
TU168464 other downstream 117464 9535268 ~ 9538892 (-) True G134244
TU168269 other downstream 511061 9140824 ~ 9145295 (-) True G134119
TU168674 other upstream 134196 9790841 ~ 9791348 (-) True G134395
TU168683 other upstream 190896 9847541 ~ 9848106 (-) True G134400
TU168706 other upstream 299206 9955851 ~ 9956360 (-) True G134411
TU168694 other upstream 301600 9958245 ~ 9958873 (-) True G134403
TU168679 other upstream 493836 10150481 ~ 10244924 (-) False G134397

Expression Profile