RNA id: TU168639


Basic Information

Item Value
RNA id TU168639
length 409
RNA type TUCP
GC content 0.54
exon number 2
gene id G134366
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10139954 ~ 10140457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACAGATCCACATTGATCCAGTTCCTACAGAGATTGAGCTCAGCCTCGCTTCGGTATGTGGTTCTTATCTGCCCTTGTCATCGTGCAGGCTGCCTTGACATGTGTCCGGGCCCAGATCCTGCTGACACAGCCTGAGGCAGAAACGAGGAAGCCAGGAGAGACTGTGAAGCTGTCCTGCGAAGTGTCAGGGTTCAGTCTGAGTGACCGCTGGATGTCTTGGACTCGCCAGGCCCCTGGGAAAGGCCTGGAATGGCTCGGAGAGATCAACCAGGGTGGGAGCACAATAAACTACATCGAGTCTGTCCGTGGAAGATTCACCATCTCCAAGGAGAATTCAAACAACAAGCTGTTTCTGCAGATGAGCAGCCTGAGGCCTGAAGACACggctgtgtattactgtgctcGTTA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0045321 leukocyte activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168608 lncRNA upstream 193465 9927912 ~ 9946489 (+) True G134341
TU168614 lncRNA upstream 194214 9886858 ~ 9945740 (+) True G134346
TU168586 lncRNA upstream 216937 9847522 ~ 9923017 (+) True G134335
TU168577 lncRNA upstream 369269 9769657 ~ 9770685 (+) True G134326
TU168553 lncRNA upstream 460852 9676778 ~ 9679102 (+) True G134305
TU168643 lncRNA downstream 53937 10194394 ~ 10244729 (+) True G134369
TU168606 lncRNA downstream 58694 10199151 ~ 10200970 (+) True G134339
TU168654 lncRNA downstream 129223 10269680 ~ 10270054 (+) True G134378
TU168804 lncRNA downstream 454392 10594849 ~ 10595406 (+) True G134495
TU168807 lncRNA downstream 458082 10598539 ~ 10598841 (+) True G134498
AMCG00012078 mRNA upstream 39498 10098148 ~ 10100456 (+) True AMCG00012078
AMCG00012079 mRNA upstream 65212 10067556 ~ 10074742 (+) True AMCG00012079
AMCG00012074 mRNA upstream 123763 10014844 ~ 10016191 (+) True AMCG00012074
AMCG00012076 mRNA upstream 135863 9999738 ~ 10004091 (+) True AMCG00012076
AMCG00012075 mRNA upstream 140225 9979890 ~ 9999729 (+) True AMCG00012075
AMCG00012082 mRNA downstream 124643 10265100 ~ 10280532 (+) True AMCG00012082
AMCG00012083 mRNA downstream 198371 10338828 ~ 10353743 (+) True AMCG00012083
AMCG00012084 mRNA downstream 223499 10363956 ~ 10392598 (+) True AMCG00012084
AMCG00012087 mRNA downstream 402956 10543413 ~ 10545945 (+) True AMCG00012087
AMCG00012086 mRNA downstream 411213 10551670 ~ 10564853 (+) True AMCG00012086
TU168638 other upstream 5362 10134027 ~ 10134592 (+) True G134365
TU168629 other upstream 105261 10034186 ~ 10034693 (+) True G134357
TU168607 other upstream 203543 9935926 ~ 9936411 (+) True G134340
TU168605 other upstream 272811 9852890 ~ 9867143 (+) True G134338
TU168543 other upstream 483227 9656357 ~ 9656727 (+) True G134295
TU168604 other downstream 82547 10223004 ~ 10259224 (+) True G134337
TU168648 other downstream 112353 10252810 ~ 10307839 (+) True G134373
TU168610 other downstream 162816 10303273 ~ 10317818 (+) True G134343
TU168966 other downstream 786149 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 1101772 11242229 ~ 11290522 (+) False G134697

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU398487 False 400 TUCP 0.44 2 NW_019172755.1 158423 ~ 161481 (-)