RNA id: TU168683



Basic Information


Item Value
RNA id TU168683
length 468
RNA type TUCP
GC content 0.50
exon number 2
gene id G134400
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9847541 ~ 9848106 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCAGTCCCAAGCAACGCCAGCGGATGAGACCTGCCTCTCTGACACAGACATGGAagtctttgtgtgtttctggCTTTTATTGTGTTGCTTCAGGGGGTGTCTCTCTGTCACCTTGACTCAGTCAACATCTTCTGAAGTGAAGACGCCAGGACAGACTCTGAGTATTGTGTGCCGTGGCTCTGGTTACACATTTTCAAGTCACTGTATTAGCTGGATTCGCCAGGCTCCTGGAAAGGGCCTCGAATATCTGGGTCGTTGCAGCACAATCAGTGCACAGAGTGTCCAAGGAAGACTGACGCTTATCTGGGACACCTCTAACAGCCAGTCTACACTGACGCTGAGCGGCCTGAGAGCTGAAGACACggctgtgtattactgtgcccGAGACTCACAGTGACACAGACTGATAGAGGAGCAATACAAAAACTACTTCCCTTTCTTGTTCCATTGTAAACAGTCAATTcaac

Function


GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168676 lncRNA downstream 48095 9792310 ~ 9799446 (-) True G134396
TU168546 lncRNA downstream 190896 9656356 ~ 9656645 (-) True G134298
TU168438 lncRNA downstream 431083 9414316 ~ 9416458 (-) True G134226
TU168298 lncRNA downstream 656249 9154436 ~ 9191292 (-) True G134143
TU168210 lncRNA downstream 1044555 8802407 ~ 8802986 (-) True G134069
TU168689 lncRNA upstream 4795 9852901 ~ 10344049 (-) False G134402
TU168692 lncRNA upstream 4795 9852901 ~ 9867138 (-) False G134402
TU168690 lncRNA upstream 79806 9927912 ~ 10346189 (-) False G134402
TU168696 lncRNA upstream 87994 9936100 ~ 9946489 (-) True G134405
TU168695 lncRNA upstream 352696 10200802 ~ 10201225 (-) True G134404
AMCG00012070 mRNA downstream 73500 9768512 ~ 9774041 (-) True AMCG00012070
AMCG00012071 mRNA downstream 98989 9748269 ~ 9748552 (-) True AMCG00012071
AMCG00012059 mRNA downstream 158860 9682673 ~ 9688681 (-) True AMCG00012059
AMCG00012063 mRNA downstream 191514 9651257 ~ 9656027 (-) True AMCG00012063
AMCG00012061 mRNA downstream 197522 9645594 ~ 9650019 (-) True AMCG00012061
AMCG00012072 mRNA upstream 38304 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012073 mRNA upstream 122887 9970993 ~ 9975251 (-) True AMCG00012073
AMCG00012077 mRNA upstream 196514 10044620 ~ 10061469 (-) True AMCG00012077
AMCG00012080 mRNA upstream 232610 10080716 ~ 10092937 (-) True AMCG00012080
AMCG00012081 mRNA upstream 357366 10205472 ~ 10206762 (-) True AMCG00012081
TU168674 other downstream 56193 9790841 ~ 9791348 (-) True G134395
TU168522 other downstream 221940 9612910 ~ 9625601 (-) False AMCG00012058
TU168523 other downstream 221940 9612910 ~ 9625601 (-) False AMCG00012058
TU168524 other downstream 221940 9612910 ~ 9625601 (-) False AMCG00012058
TU168464 other downstream 308649 9535268 ~ 9538892 (-) True G134244
TU168706 other upstream 107745 9955851 ~ 9956360 (-) True G134411
TU168694 other upstream 110139 9958245 ~ 9958873 (-) True G134403
TU168679 other upstream 302375 10150481 ~ 10244924 (-) False G134397
TU168732 other upstream 306559 10154665 ~ 10155208 (-) True G134435
TU168697 other upstream 328814 10176920 ~ 10223219 (-) True G134406

Expression Profile