RNA id: TU168688


Basic Information

Item Value
RNA id TU168688
length 1994
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G134402
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9852901 ~ 10347725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCGTGctgattgttattgtttttttttattttgttttgtttctgctttttaagtttgaatcacaaaaatgttaaaagagACACAACAGACAAGACAACACAACATTCCTGTTACAATACAGAAGCACAATAACAAGACAATACAGAGGCACAGTCATGGGAGATGTTACCCTCTGCAGGTGTCGGGCACTTTGAGATTGAGATTGACTAAAGTGGGCTTGCCTGAAGAGCTATCAATCGTTCTGGTTATCATGGGCACTGAGTCGGGGGTGCTTTCATGGTGGACAACACAGGTGTAAAAGACGCCACTGTTCCAATCGCTTGTCCGAACGCTAAGCTTGCTGTAGACTGAATAGGACTTCCCGGCCTCCTCCTCAATCAGGCTGGTGGTGTGGAACTTAGACTCCGCGACAGGCACATCATCGGCAAGCCAAGAGACGTACACATCCTTGGGGTAGAAGTCTTTGATGAAGCAGGTCAGAGGCAACTCTTCCCTAATGCCTGAGTTTTGTTCTGAGGAGGGAGGCAGCAGAAAGACGGAGGGCGTCCTCTCCACATGGCCTGCAAATACTCTCCTGTATGTTTCTTCTTTTGGAGAAGGAAAGGACGCCGGGTGAGCTACTACACATTTGTAGGTGCTGTTACTGCTCCACTCCTCTTTGCTGATAATCACTCTGGATGTTGCCTGTATGCGTCCATCATCTGTATACTGAAGCTCTGGAGTGGGTGTTACAGATGCTAGGGGCTTTTTACCATTGTCCTTATACCAGGTTATGGCAATGGTCTTCTCATTCTCATCTGCCAAGCCCCGGGCAATGCAGGTCAGTGTGCCTCTCTTCTGCAGGAAAACCTCTTTCGCCTCTGGGCCCTGAATCGTAACTGTTACGTCGGTGGTCAACGGATCACCCCAATGAAGCTGGTATTCTTCAATTTGCTCCAGCCTTCGGTGTGGTGAACTTCACAGGCAAAACTGTTAAATGGGTTCCTCCATTCCTTTTCAGTTACTCTTAAGGAGCTGCTAGcactgtacttttctttttcgTCCTTAACGCTGCCGTGACTTTCAACCCCTTCGGTCACTAGGCCTtggttgttccaccatttaaaAGAGACATCAAGGGGGCTAAAGCCAATGGCCAAGCATATAATTTTGGCTGTTTTGTCAGATTTAAAGTCCTCAGCAGATGGTGGGACTACGTAAACAGTAGGATGAACTGGTATCggagctgaaaaacaaacatacacacatatatatacacaaccaCGTGTGCGGGTTCTGATAAAGAAAGGAGAACTTCTGAAAAAGTGGAGTAAATGCATGTGAGCAGGGGCGAGTACATGACTACTCCCtcagttttgaaaatggggGCAAGCATATAATTTGGGCTCCCCACTTTTTAGAGTGACCAGACATTTTGTAGGGCCCATGTATCAGCCGAGTTAAATAATTTCCTGTGAAGCACAATCTGTTGAATCTTCCTCCCCCCTCCGGTAAACAGTCCAATGCACCCCATCAACAACCCTATGGACTCCCCACCTCCTCACTTTAAGACATGCGGCGAAACCCCTTCAGGTGAGGAAATACTTAAGATGGTCAAGGGTTGTCTAAGTGAATGGGTTCGTTAccagaaagaaataaaaaacttgTAAGATCCTTTTACCAAAGCAATTATTTAAGCATAAAGGGGCAAAGGGAAATGacgttattttttttctttaaggtaaacctaaatacacacaaaccacTAATAAGACAAGTTACATGAGCTGGAAAATGGGGCAAAAAAGTCACCATaaagcagaagaaagaaaatgacaaagcagacaaacatgttttgtaCTGGTTCCACGATGTTCAAGGGTGAAATGGGTTTTGGTCAATTTTTCCCCAAGCCCCTGTAAACAACAGGGCTTTAGATccatgtgttattattataataataacaattattatattattattattattattattattattattattattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168689 lncRNA downstream 1013 9852901 ~ 10344049 (-) False G134402
TU168754 lncRNA downstream 39035 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 57933 10225627 ~ 10287129 (-) True G134443
TU168695 lncRNA downstream 143837 10200802 ~ 10201225 (-) True G134404
TU168678 lncRNA downstream 163001 9809798 ~ 10182061 (-) False G134397
TU169026 lncRNA upstream 619551 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 619551 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 982741 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 1048235 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 1148950 11496675 ~ 11769509 (-) True G134817
AMCG00012081 mRNA downstream 138300 10205472 ~ 10206762 (-) True AMCG00012081
AMCG00012080 mRNA downstream 252125 10080716 ~ 10092937 (-) True AMCG00012080
AMCG00012077 mRNA downstream 283593 10044620 ~ 10061469 (-) True AMCG00012077
AMCG00012073 mRNA downstream 369811 9970993 ~ 9975251 (-) True AMCG00012073
AMCG00012072 mRNA downstream 454316 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012085 mRNA upstream 19364 10367089 ~ 10436690 (-) True AMCG00012085
AMCG00012093 mRNA upstream 218485 10566210 ~ 10582453 (-) True AMCG00012093
AMCG00012090 mRNA upstream 239857 10587582 ~ 10591854 (-) True AMCG00012090
AMCG00012091 mRNA upstream 245157 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012092 mRNA upstream 286865 10634590 ~ 10650309 (-) True AMCG00012092
TU168748 other downstream 89024 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 93947 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 100138 10244421 ~ 10244924 (-) True G134397
TU168739 other downstream 114619 10212142 ~ 10230443 (-) True G134441
TU168697 other downstream 121843 10176920 ~ 10223219 (-) True G134406
TU168910 other upstream 382050 10729775 ~ 10811881 (-) True G134581
TU169020 other upstream 587207 10934932 ~ 10961871 (-) False AMCG00012111
TU169224 other upstream 982741 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1726279 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1771555 12119280 ~ 12119632 (-) False AMCG00012170

Expression Profile