RNA id: TU168689


Basic Information

Item Value
RNA id TU168689
length 927
lncRNA type read_through
GC content 0.49
exon number 6
gene id G134402
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9852901 ~ 10347725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAAATCAATTACCCAATTAAGCAACCaatcaattcataaattaagTGATCAATGATCTTAcgtggtgttggtgttggtggtTTCAATTCAGCAGATGCAGTTCCAGATGGGTTTGTGGCCTTGCAGTAGAACATCTTATCCTTATTCTCCCAGTCTGCTTTGGGGATGGACAGCTGGCTGGTCATGGAGTACAGGCCTCCGCTGCCAAGCACTGATGGGTATTTCTGAAAGTTGGTCAGCTCTTTTGAGCCTTCACTCCACCCGAAGGTCAGGGAATCGGGGCTGAACCCTGTTGCCAGGCAGCCTACACTGACTGGATCCACACTCACCCCAGAGCCGCAGGGAACAAGTGGGAAGAGGGTTGGCGCAGTTGctgcagATGTAACGGTGACCATGGTTCCTTTCCCCCAGTAGTCAAATCtggcacagtaatacacagcgctgtcttcagtcttcaggctgttcatttgtaaatacagtgtGCTTTTGGAGTTGTCTCTGGAGATGGTGAATCTGCCTTGAACTGACTGGGCATACCATGtactaccaccaccactgtTAATTTCAGCCACCCATTCCAGCCCCTTCCCAGGAGCCTGTCTAACCCAGTGCATCCAGTAGCTGCTGAAAGTGAATCCTGAGGCTGTACAGGACAGTGTGTGGGATTCTCCAGGCTTTTTAACTGCTGCCTCAGACTCAGTCAGCACGATCTGGGACTGAACACCTGTTAAACATGTGGCCGCTATAATAATTGCAGTTAGACTGGCCATTGTTTGAGGTTGAGGTTGCAGTAATGAGACTTCAGTCTAGGCAGTCTGCACATTCACTGTGTCTCCTTCAGTGCAGTGAGATAAATGAAGCAGGAAGCCCTCTGAGTTTGCATGGACTCCTCCTCATGGGATGGGCAGTGTGGCTCAGCGCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168676 lncRNA downstream 53455 9792310 ~ 9799446 (-) True G134396
TU168546 lncRNA downstream 196256 9656356 ~ 9656645 (-) True G134298
TU168438 lncRNA downstream 436443 9414316 ~ 9416458 (-) True G134226
TU168298 lncRNA downstream 661609 9154436 ~ 9191292 (-) True G134143
TU168210 lncRNA downstream 1049915 8802407 ~ 8802986 (-) True G134069
TU168688 lncRNA upstream 1013 10345062 ~ 10347725 (-) True G134402
TU169026 lncRNA upstream 623227 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 623227 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 986417 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 1051911 11395960 ~ 11400701 (-) True G134819
AMCG00012070 mRNA downstream 78860 9768512 ~ 9774041 (-) True AMCG00012070
AMCG00012071 mRNA downstream 104349 9748269 ~ 9748552 (-) True AMCG00012071
AMCG00012059 mRNA downstream 164220 9682673 ~ 9688681 (-) True AMCG00012059
AMCG00012063 mRNA downstream 196874 9651257 ~ 9656027 (-) True AMCG00012063
AMCG00012061 mRNA downstream 202882 9645594 ~ 9650019 (-) True AMCG00012061
AMCG00012085 mRNA upstream 23040 10367089 ~ 10436690 (-) True AMCG00012085
AMCG00012093 mRNA upstream 222161 10566210 ~ 10582453 (-) True AMCG00012093
AMCG00012090 mRNA upstream 243533 10587582 ~ 10591854 (-) True AMCG00012090
AMCG00012091 mRNA upstream 248833 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012092 mRNA upstream 290541 10634590 ~ 10650309 (-) True AMCG00012092
TU168683 other downstream 4795 9847541 ~ 9848106 (-) True G134400
TU168674 other downstream 61553 9790841 ~ 9791348 (-) True G134395
TU168522 other downstream 227300 9612910 ~ 9625601 (-) False AMCG00012058
TU168523 other downstream 227300 9612910 ~ 9625601 (-) False AMCG00012058
TU168524 other downstream 227300 9612910 ~ 9625601 (-) False AMCG00012058
TU168910 other upstream 385726 10729775 ~ 10811881 (-) True G134581
TU169020 other upstream 590883 10934932 ~ 10961871 (-) False AMCG00012111
TU169224 other upstream 986417 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1729955 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1775231 12119280 ~ 12119632 (-) False AMCG00012170

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU29192 True 272 lncRNA 0.43 1 CI01000004 2407084 ~ 2407355 (-)
rainbow trout (Oncorhynchus mykiss) TU29192 True 362 lncRNA 0.44 1 NC_048565.1 25458800 ~ 25459161 (+)
tiger barb (Puntius tetrazona) TU29192 True 1883 TUCP 0.44 6 NC_056701.1 12835381 ~ 12987913 (+)