RNA id: TU168692


Basic Information

Item Value
RNA id TU168692
length 503
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G134402
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9852901 ~ 10347725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggcacagtaatacacagcgCTGTCTTCAGTCTTCAGGCTGTTCATTTGTAAATACACTGTGCTTTTGGAGTTGTCTCTGGAGATGGTGAATCTGCCTTTATCTGACTGGGCATAATCTGAAGAACTGTCAGTATTAATACGACCAACCCATTCCAGTCCCTTCCCAGGAGCCTGTCTAACCCAGTGCATCCAGTAGCTGCTGAAAGTGAATCCTGAGGCTGTACAGGACAGTGTGTGGGATTCTCCAGGCTTTTTAACTGCTGCCTCAGACTCAGTCAGCACGATCTGGGACTGAACACCTGTTAAACATGTGGCCGCTATAATAATTGCAGTTAGACTGGCCATTGTTTGAGGTTGAGGTTGCAGTAATGAGACTTCAGTCTAGGCAGTCTGCACATTCACTGTGTCTCCTTCAGTGCAGTGAGATAAATGAAGCAGGAAGCCCTCTGAGTTTGCATGGACTCCTCCTCATGGGATGGGCAGTGTGGCTCAGCGCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168676 lncRNA downstream 53455 9792310 ~ 9799446 (-) True G134396
TU168546 lncRNA downstream 196256 9656356 ~ 9656645 (-) True G134298
TU168438 lncRNA downstream 436443 9414316 ~ 9416458 (-) True G134226
TU168298 lncRNA downstream 661609 9154436 ~ 9191292 (-) True G134143
TU168210 lncRNA downstream 1049915 8802407 ~ 8802986 (-) True G134069
TU168690 lncRNA upstream 60774 9927912 ~ 10346189 (-) False G134402
TU168696 lncRNA upstream 68962 9936100 ~ 9946489 (-) True G134405
TU168695 lncRNA upstream 333664 10200802 ~ 10201225 (-) True G134404
TU168743 lncRNA upstream 358489 10225627 ~ 10287129 (-) True G134443
TU168754 lncRNA upstream 436431 10303569 ~ 10306027 (-) True G134451
AMCG00012070 mRNA downstream 78860 9768512 ~ 9774041 (-) True AMCG00012070
AMCG00012071 mRNA downstream 104349 9748269 ~ 9748552 (-) True AMCG00012071
AMCG00012059 mRNA downstream 164220 9682673 ~ 9688681 (-) True AMCG00012059
AMCG00012063 mRNA downstream 196874 9651257 ~ 9656027 (-) True AMCG00012063
AMCG00012061 mRNA downstream 202882 9645594 ~ 9650019 (-) True AMCG00012061
AMCG00012072 mRNA upstream 19272 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012073 mRNA upstream 103855 9970993 ~ 9975251 (-) True AMCG00012073
AMCG00012077 mRNA upstream 177482 10044620 ~ 10061469 (-) True AMCG00012077
AMCG00012080 mRNA upstream 213578 10080716 ~ 10092937 (-) True AMCG00012080
AMCG00012081 mRNA upstream 338334 10205472 ~ 10206762 (-) True AMCG00012081
TU168683 other downstream 4795 9847541 ~ 9848106 (-) True G134400
TU168674 other downstream 61553 9790841 ~ 9791348 (-) True G134395
TU168522 other downstream 227300 9612910 ~ 9625601 (-) False AMCG00012058
TU168706 other upstream 88713 9955851 ~ 9956360 (-) True G134411
TU168694 other upstream 91107 9958245 ~ 9958873 (-) True G134403
TU168679 other upstream 283343 10150481 ~ 10244924 (-) False G134397
TU168732 other upstream 287527 10154665 ~ 10155208 (-) True G134435
TU168697 other upstream 309782 10176920 ~ 10223219 (-) True G134406

Expression Profile