RNA id: TU168739


Basic Information

Item Value
RNA id TU168739
length 416
RNA type TUCP
GC content 0.50
exon number 3
gene id G134441
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10212142 ~ 10230443 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGAGGCTTCTCCAGAAGAGACAACATGAATCCCCTTGATGTTGTGCTTCTTCTGCTGGGACTTGCAGTTGTTCCAGTGCAGTCCAGCATCACACTGACCCAGCCTGATACAGCAGATATTAAGAAGCCAGGAGAGTCTCTGAAACTGTCCTGCCGGGTTTCAGGGTTCACAATAGACAGCGATTATAAAGGCTGGATCCGACAGGCTCCTGGAAAGGGGTTAGAATGGCTGGCACTGTATTGGAAGGAAGGCCAAACAAATTATTACGCATCCACAATCCAAGGACGTTTTACTGCCTCCATGGACACCTCCTCCAGCACCTTCTTCTTACAACTGAACAACCTGAGAGCTGAAGACACggctgtgtattactgtgcgagagacacagtgagagaagTGAAGCCTGAGCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168695 lncRNA downstream 10917 10200802 ~ 10201225 (-) True G134404
TU168678 lncRNA downstream 30081 9809798 ~ 10182061 (-) False G134397
TU168696 lncRNA downstream 265653 9936100 ~ 9946489 (-) True G134405
TU168692 lncRNA downstream 345004 9852901 ~ 9867138 (-) False G134402
TU168676 lncRNA downstream 412696 9792310 ~ 9799446 (-) True G134396
TU168754 lncRNA upstream 73126 10303569 ~ 10306027 (-) True G134451
TU168688 lncRNA upstream 114619 10345062 ~ 10347725 (-) True G134402
TU169026 lncRNA upstream 736833 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 736833 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 1100023 11330466 ~ 11347810 (-) False G134803
AMCG00012081 mRNA downstream 5380 10205472 ~ 10206762 (-) True AMCG00012081
AMCG00012080 mRNA downstream 119205 10080716 ~ 10092937 (-) True AMCG00012080
AMCG00012077 mRNA downstream 150673 10044620 ~ 10061469 (-) True AMCG00012077
AMCG00012073 mRNA downstream 236891 9970993 ~ 9975251 (-) True AMCG00012073
AMCG00012072 mRNA downstream 321396 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012085 mRNA upstream 136646 10367089 ~ 10436690 (-) True AMCG00012085
AMCG00012093 mRNA upstream 335767 10566210 ~ 10582453 (-) True AMCG00012093
AMCG00012090 mRNA upstream 357139 10587582 ~ 10591854 (-) True AMCG00012090
AMCG00012091 mRNA upstream 362439 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012092 mRNA upstream 404147 10634590 ~ 10650309 (-) True AMCG00012092
TU168732 other downstream 56934 10154665 ~ 10155208 (-) True G134435
TU168694 other downstream 253269 9958245 ~ 9958873 (-) True G134403
TU168706 other downstream 255782 9955851 ~ 9956360 (-) True G134411
TU168683 other downstream 364036 9847541 ~ 9848106 (-) True G134400
TU168674 other downstream 420794 9790841 ~ 9791348 (-) True G134395
TU168677 other upstream 13978 10244421 ~ 10244924 (-) True G134397
TU168746 other upstream 19828 10250271 ~ 10251115 (-) True G134445
TU168748 other upstream 25083 10255526 ~ 10256038 (-) True G134447
TU168910 other upstream 499332 10729775 ~ 10811881 (-) True G134581
TU169020 other upstream 704489 10934932 ~ 10961871 (-) False AMCG00012111

Expression Profile