RNA id: TU168748


Basic Information

Item Value
RNA id TU168748
length 409
RNA type TUCP
GC content 0.49
exon number 2
gene id G134447
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10255526 ~ 10256038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGATCTCCTTCTTCTTGGCCGCTGTTCAAACATCACAATGCAGTTGAAGGCTGTTCTGCTCATGATGGTGCTGTCTGTCGCAGGTGTCCGGGCTGATTTTGTGTTGACCCAGCCTGGACCTGAGGTAAAGAAGCCAGGAGAGTCTGTCACACTGTCCTGTCAAGGTTCAGGGGAAGATGAGTATGGACTTGACTTCACTGCTTATTACATGAGCTGGATTCGACAAGCTCCTGGGAAAGGACTGGAATGGCTGGGCTATATcaatgatgatggtgatgatacaAGCTATCTTGAGTCTGTGAAGGGAAGATTCACCATCTCCAGAGACAACTCCAAAAGCACAGTGTATCTACAAATGAACAGCCTGCAGACTGCAGACAGcgctgtgtattactgtgccaGCGAC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168695 lncRNA downstream 54301 10200802 ~ 10201225 (-) True G134404
TU168678 lncRNA downstream 73465 9809798 ~ 10182061 (-) False G134397
TU168696 lncRNA downstream 309037 9936100 ~ 9946489 (-) True G134405
TU168692 lncRNA downstream 388388 9852901 ~ 9867138 (-) False G134402
TU168676 lncRNA downstream 456080 9792310 ~ 9799446 (-) True G134396
TU168754 lncRNA upstream 47531 10303569 ~ 10306027 (-) True G134451
TU168688 lncRNA upstream 89024 10345062 ~ 10347725 (-) True G134402
TU169026 lncRNA upstream 711238 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 711238 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 1074428 11330466 ~ 11347810 (-) False G134803
AMCG00012081 mRNA downstream 48764 10205472 ~ 10206762 (-) True AMCG00012081
AMCG00012080 mRNA downstream 162589 10080716 ~ 10092937 (-) True AMCG00012080
AMCG00012077 mRNA downstream 194057 10044620 ~ 10061469 (-) True AMCG00012077
AMCG00012073 mRNA downstream 280275 9970993 ~ 9975251 (-) True AMCG00012073
AMCG00012072 mRNA downstream 364780 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012085 mRNA upstream 111051 10367089 ~ 10436690 (-) True AMCG00012085
AMCG00012093 mRNA upstream 310172 10566210 ~ 10582453 (-) True AMCG00012093
AMCG00012090 mRNA upstream 331544 10587582 ~ 10591854 (-) True AMCG00012090
AMCG00012091 mRNA upstream 336844 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012092 mRNA upstream 378552 10634590 ~ 10650309 (-) True AMCG00012092
TU168746 other downstream 4411 10250271 ~ 10251115 (-) True G134445
TU168679 other downstream 10602 10150481 ~ 10244924 (-) False G134397
TU168910 other upstream 473737 10729775 ~ 10811881 (-) True G134581
TU169020 other upstream 678894 10934932 ~ 10961871 (-) False AMCG00012111
TU169224 other upstream 1074428 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1817966 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1863242 12119280 ~ 12119632 (-) False AMCG00012170

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU255003 True 856 TUCP 0.42 3 NC_047607.1 22250931 ~ 22272210 (-)
tiger barb (Puntius tetrazona) TU255003 True 409 lncRNA 0.62 2 NW_025047683.1 4916703 ~ 4995100 (+)