RNA id: TU168910


Basic Information

Item Value
RNA id TU168910
length 479
RNA type TUCP
GC content 0.46
exon number 4
gene id G134581
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10729775 ~ 10811881 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTAATACTGTTTTAACGGTCATTATATTAAATacgacattattattattattattattattattattattattattattattattattattattattattattattatagataatattttgaataaaaacaaaaacccaatcACATACACGAATATGATTTCCCCCGGAACGGGCGCGACGGGCCGCTTGCGCTCAGCCGGAGCGCTTTGTCCACAGCACTGTCTGGGGGCATTTGGTGTCACCCGGAAAGCGGCCCCCCAGCGACGGGGAAAGATGGCGGCGGAGAGCTGtgtggaCTCAGAGATCGAGGTTCTCCAGTCCATTTATCTGGATGAGCTGACAGTGACCCATCAGCAAGACAGtgagtGTCCCTGGTTGGTCAGTATCACGCTGTACCCTTCCACAGCGCAGGACTGTGACAGCCAGTACGTCCGACTGACTCTCAGCCTGGCCCTGTCTCCACAGGACCCAGTCTG

Function

GO:      GO:0008536

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168688 lncRNA downstream 382050 10345062 ~ 10347725 (-) True G134402
TU168690 lncRNA downstream 383586 9927912 ~ 10346189 (-) False G134402
TU168689 lncRNA downstream 385726 9852901 ~ 10344049 (-) False G134402
TU168754 lncRNA downstream 423748 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 442646 10225627 ~ 10287129 (-) True G134443
TU169026 lncRNA upstream 155395 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 155395 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 518585 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 584079 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 684794 11496675 ~ 11769509 (-) True G134817
AMCG00012094 mRNA downstream 25103 10683368 ~ 10704672 (-) True AMCG00012094
AMCG00012092 mRNA downstream 79466 10634590 ~ 10650309 (-) True AMCG00012092
AMCG00012091 mRNA downstream 133404 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012090 mRNA downstream 137921 10587582 ~ 10591854 (-) True AMCG00012090
AMCG00012093 mRNA downstream 147322 10566210 ~ 10582453 (-) True AMCG00012093
AMCG00012100 mRNA upstream 6214 10818095 ~ 10827147 (-) True AMCG00012100
AMCG00012103 mRNA upstream 18636 10830517 ~ 10836605 (-) True AMCG00012103
AMCG00012101 mRNA upstream 25435 10837316 ~ 10848475 (-) True AMCG00012101
AMCG00012102 mRNA upstream 40728 10852609 ~ 10858416 (-) True AMCG00012102
AMCG00012104 mRNA upstream 63206 10875087 ~ 10879326 (-) True AMCG00012104
TU168748 other downstream 473737 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 478660 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 484851 10244421 ~ 10244924 (-) True G134397
TU168739 other downstream 499332 10212142 ~ 10230443 (-) True G134441
TU168697 other downstream 506556 10176920 ~ 10223219 (-) True G134406
TU169020 other upstream 123051 10934932 ~ 10961871 (-) False AMCG00012111
TU169224 other upstream 518585 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1262123 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1307399 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 1379674 12191555 ~ 12213799 (-) True AMCG00012174

Expression Profile