RNA id: TU168966


Basic Information

Item Value
RNA id TU168966
length 1374
RNA type TUCP
GC content 0.47
exon number 4
gene id G134613
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10926606 ~ 10935107 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAATCCTCTGTGTCCAGAGAGCCGCCGTAGTTACTGAGAGTCAGTGCTCTGTGTCCAGTGAGAATCCAGGAGGGTCAAGATGCTtttcctgcagctgctgttctCTGTCCTGCTACTGAACACCTGCGAAGGGCTACGATCGGCAGCTGCAGAGTCTGGGGAGGGCACACAAACCTGAGGCAAGGCAATGTGTCGCATATCAGACAAATCTACACACACAGCTATGACTTGGTCCTGGTTGAGCTGGAGACTCCCTTCAAGTTGGTTCCCATCGCACTGCCCAATCCTGGCTCCATGCCTCCATCTAACACACTTTGCTTTGTCGCTGCCTGGCAATCCCTCCACAGTTTAAACATGTGGCATCCAATGAGTGCGATCATTCAAGTCACGAGTTGTGGCAGACATTACCCACATCGATTCGACACATTCTGTGCCATCGGCAAGAGCAGTACAACTAGAATCTGCAAGggtgACTCAGGTGGCCCTATGTTCTGCTATGCTGGGCGCAGTTACATCCTGTATGGGGTGATATCTGAGGGTCAGGCAGATTGCAACAATAAAGAGTCTGTACCAACCCTATTCAGTAAAGTCTCCCAAGAGGTTAACTGGATCAGGAGCATGATGCAAAATCTGGCCTGAGGCCTGGGGGGGGGAGAGCATCCCCTGTTTGCCTGCCTAGCTCAATGCACTGCTATACTCAAACCCCCGAAGAACCCAGAGTGATGTATATATGAAGCTGtcttacacacatttcacaggcTTGATGAAAAAAATAGTGATCTGGGTTGAGTATGCCTCTGTGTGCCATGTATGTATCATTTGGGTGTGTAAGCATTAATCACACctagaaagagagggaaagtcGGGGAAGAATACTGGAGATCCccttcagttttaaaaattTACAATAGgatacaagaaaaagaaagagagaaaatgagatGATAGGAAAGCCCCTCATACAACAGTGCAGCGGATAgtgagccagagagagagagagggaaatgtatgttttcttttgcagtgttctatctttcgctctctctctacctcttaTCTCTGCCCCCTCCCCatttcccatctctctctctgtccatctggtGTGAGTCTGCTCttggctctgctctgctctgagAGATCAGTTGTACTGTGTCTCTGCTGAACAGCTCAATAAAACTGCAAAGCATTCAAACACCTGGTCTGGGACTGTATTTCTGTACTGATCCATTAACttactcactgactgactggcaaaGAGTGTGCATTGTGCACAGTAAGGCTTGAATGTTAGATGTGAAgatcacaaaaacatttaagcGGTGTACTGTTGAAACTAGAGGACCCAGCTGGGAAGAAAAGTTGGTAACATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168877 lncRNA upstream 73315 10849858 ~ 10853291 (+) True G134556
TU168833 lncRNA upstream 242509 10633508 ~ 10684097 (+) True AMCG00012088
TU168807 lncRNA upstream 327765 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 331200 10594849 ~ 10595406 (+) True G134495
TU168615 lncRNA upstream 498082 9886858 ~ 10428524 (+) False G134346
TU168958 lncRNA downstream 3262 10933715 ~ 10935107 (+) False G134613
TU168978 lncRNA downstream 36823 10967276 ~ 10971088 (+) False G134615
TU168979 lncRNA downstream 36823 10967276 ~ 10982794 (+) True G134615
TU168992 lncRNA downstream 118612 11049065 ~ 11055684 (+) False AMCG00012112
TU169080 lncRNA downstream 303228 11233681 ~ 11233883 (+) True G134692
AMCG00012106 mRNA upstream 9468 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012107 mRNA upstream 17561 10905052 ~ 10909045 (+) True AMCG00012107
AMCG00012110 mRNA upstream 36359 10879944 ~ 10890247 (+) True AMCG00012110
AMCG00012105 mRNA upstream 107020 10816588 ~ 10819586 (+) True AMCG00012105
AMCG00012099 mRNA upstream 110278 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012108 mRNA downstream 50225 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012112 mRNA downstream 124986 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012123 mRNA downstream 256315 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012121 mRNA downstream 283155 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012122 mRNA downstream 316729 11247182 ~ 11248652 (+) True AMCG00012122
TU168610 other upstream 608788 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 618767 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 667382 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 786149 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 792014 10134027 ~ 10134592 (+) True G134365
TU169090 other downstream 311776 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 316229 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 354297 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 505926 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 1100444 12030897 ~ 12031490 (+) True G134898

Expression Profile