RNA id: TU169027


Basic Information

Item Value
RNA id TU169027
length 256
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G134648
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10967276 ~ 10982791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTACCTATTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168688 lncRNA downstream 619551 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 661249 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 680147 10225627 ~ 10287129 (-) True G134443
TU168695 lncRNA downstream 766051 10200802 ~ 10201225 (-) True G134404
TU168696 lncRNA downstream 1020787 9936100 ~ 9946489 (-) True G134405
TU169223 lncRNA upstream 347675 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 413169 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 513884 11496675 ~ 11769509 (-) True G134817
TU169274 lncRNA upstream 577306 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 620732 11603523 ~ 11604157 (-) True G134844
AMCG00012111 mRNA downstream 5484 10957189 ~ 10961792 (-) True AMCG00012111
AMCG00012109 mRNA downstream 67683 10894348 ~ 10899593 (-) True AMCG00012109
AMCG00012104 mRNA downstream 87950 10875087 ~ 10879326 (-) True AMCG00012104
AMCG00012102 mRNA downstream 108860 10852609 ~ 10858416 (-) True AMCG00012102
AMCG00012101 mRNA downstream 118801 10837316 ~ 10848475 (-) True AMCG00012101
AMCG00012114 mRNA upstream 4451 10987242 ~ 10988426 (-) True AMCG00012114
AMCG00012113 mRNA upstream 7826 10990617 ~ 10994160 (-) True AMCG00012113
AMCG00012116 mRNA upstream 20919 11003710 ~ 11016852 (-) True AMCG00012116
AMCG00012115 mRNA upstream 47369 11030160 ~ 11039337 (-) True AMCG00012115
AMCG00012117 mRNA upstream 106485 11089276 ~ 11103610 (-) True AMCG00012117
TU169020 other downstream 5405 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 155395 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 711238 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 716161 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 722352 10244421 ~ 10244924 (-) True G134397
TU169224 other upstream 347675 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1091213 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1136489 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 1208764 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 1219971 12202762 ~ 12213799 (-) False AMCG00012174

Expression Profile