RNA id: TU169080


Basic Information

Item Value
RNA id TU169080
length 203
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G134692
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11233681 ~ 11233883 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcccaaagtcgctctgccttcattttaaaagtcagaggcttttatacacaaaaaacaaagatctggttacaatcacaaagtcattactatattatcttagagagttagctaagcagaatatatatcattataggacagagttcataggtcaacacatggattagggagcaggcacttcaatcatactgtttgacattgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168992 lncRNA upstream 177997 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 250887 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 262593 10967276 ~ 10971088 (+) False G134615
TU168958 lncRNA upstream 298574 10933715 ~ 10935107 (+) False G134613
TU168877 lncRNA upstream 380390 10849858 ~ 10853291 (+) True G134556
TU169092 lncRNA downstream 66451 11300334 ~ 11302065 (+) True G134698
TU169157 lncRNA downstream 270077 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 385294 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 477367 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 585374 11819257 ~ 11844832 (+) True G134779
AMCG00012121 mRNA upstream 9397 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012123 mRNA upstream 38333 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012112 mRNA upstream 172651 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012108 mRNA upstream 252815 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012106 mRNA upstream 316543 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012122 mRNA downstream 13299 11247182 ~ 11248652 (+) True AMCG00012122
AMCG00012127 mRNA downstream 68571 11302454 ~ 11312044 (+) True AMCG00012127
AMCG00012128 mRNA downstream 126356 11360239 ~ 11382588 (+) True AMCG00012128
AMCG00012140 mRNA downstream 146190 11380073 ~ 11380772 (+) True AMCG00012140
AMCG00012136 mRNA downstream 152690 11386573 ~ 11388762 (+) True AMCG00012136
TU168966 other upstream 303228 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 915863 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 925842 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 974457 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 1093224 10139954 ~ 10140457 (+) True G134366
TU169090 other downstream 8346 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 12799 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 50867 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 202496 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 797014 12030897 ~ 12031490 (+) True G134898

Expression Profile